PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G08540.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 307aa    MW: 34316.4 Da    PI: 7.1752
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G08540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.14.9e-20146207359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS..STTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae..dpkvveitYegeHnhe 59 
                      Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++ ++  ++ + +++Y g+H+++
  OGLUM05G08540.1 146 DGHQWRKYGQKNINNSNHQRSYYRCTYKheqNCKATKTVQQLDSagETIMYTVVYYGQHTCK 207
                      9**************************9999*********9766115567899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-22135207IPR003657WRKY domain
SuperFamilySSF1182902.22E-21139208IPR003657WRKY domain
SMARTSM007741.2E-32144208IPR003657WRKY domain
PfamPF031061.7E-23146207IPR003657WRKY domain
PROSITE profilePS5081114.458146207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKNKGSSCRY LPHSSAPCAT DGARCFRCDH RPAIDEIVRE QSLVTQLRAV VLPALETKAD  60
DGRAEIVAQL FGSILDCSRK VISALNSRYV GESPPDGDEI VDKRRAKRKN SEGKKGDEVK  120
TKPHEHKRSR RYTNSTSQIT AVPHYDGHQW RKYGQKNINN SNHQRSYYRC TYKHEQNCKA  180
TKTVQQLDSA GETIMYTVVY YGQHTCKTNM SNAPLHVVET STPQSISTTC CSDDLGDYSQ  240
KMENMHTPEL AEVCSDELGS YHAIIGAEHS ALGLEDEHMH KLLDTFACGA LDLDSLEIDA  300
IVRSGFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-141462071069OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354200.0AC135420.4 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638919.10.0probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0D9ZW160.0A0A0D9ZW16_9ORYZ; Uncharacterized protein
STRINGOGLUM05G08540.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY DNA-binding protein 70