PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G02350.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 315aa    MW: 34449.6 Da    PI: 5.5509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G02350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.2e-193380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  OGLUM05G02350.1 33 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 80
                     89********************************************97 PP
2Myb_DNA-binding48.32.4e-1586129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  OGLUM05G02350.1  86 RGNITANEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 129
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.3512884IPR017930Myb domain
SuperFamilySSF466896.74E-3131127IPR009057Homeodomain-like
SMARTSM007171.5E-153282IPR001005SANT/Myb domain
PfamPF002496.5E-173380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-233487IPR009057Homeodomain-like
CDDcd001677.45E-123580No hitNo description
PROSITE profilePS5129416.93485135IPR017930Myb domain
SMARTSM007171.3E-1285133IPR001005SANT/Myb domain
PfamPF002499.7E-1486129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2288134IPR009057Homeodomain-like
CDDcd001672.71E-990129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDLEMEMMGM AMSPAMSSAT AAAASEDEGD LRRGPWTVEE DMLLVDYIAN HGEGRWNSLA  60
RCAGLRRTGK SCRLRWLNYL RPDVRRGNIT ANEQLLILDL HSRWGNRWSK IAQYLPGRTD  120
NEIKNYWRTR VQKHAKQLRC DVNSKEFRDV VRHVWMPRLV ERIQADAAAA GEVAAPAPLS  180
AAATRSMSSP AGAMYLHHQQ IPLAAGAMVV APAVSSEAYH HHGCGGGGDT SCSEPSQAAV  240
TMSPDDASST LRSSSAAAEN DTIHGDVLSG SWSELLATTT TTTIAATAGL PDFDELGDFE  300
DNLWSLEDIW LHQQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-253012724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638460.10.0transcription factor MYB2-like
TrEMBLA0A0D9ZTV30.0A0A0D9ZTV3_9ORYZ; Uncharacterized protein
STRINGOGLUM05G02350.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-80myb domain protein 112