PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G29470.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 377aa    MW: 41738.2 Da    PI: 9.0463
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G29470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19243338395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  OGLUM04G29470.1 243 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 334
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  OGLUM04G29470.1 335 FVVR 338
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-19240336IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-23240338No hitNo description
Gene3DG3DSA:2.40.330.102.4E-25240340IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-9241341IPR003340B3 DNA binding domain
PROSITE profilePS508639.516241343IPR003340B3 DNA binding domain
PfamPF023622.6E-15243338IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPEFLGNRHL HGVDIAGAPP AKATSPATAG  60
GLLTNTAPAT VSQIHARCRR RQIYRCCGLL PRAPPPSDPC AFARAAITAA GSARGLLSHL  120
YGGLEVGGEM REEEKSGGWD GFQTNFRMDQ AFVPASSPFP PVSSSSHSFS SAKISNGPTY  180
TKKAKKSNVK DPPIVFRRSD MESEKNDDNP DQTPVSEPPS MNQNGENLII RFNCREYRVI  240
LRKELTNSDV GNIGRIVMPK RDAEAHLPAL HQREGVTLKM DDFKFETTWN FKYRFWPNNK  300
SRMYVLESTG GFVKHHGLQT GDIFIIYKSS ESGKFVVRGE KAIKPNAIMP VVDCSCKNEL  360
NKSEECGFTI SLQTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-352383422106B3 domain-containing transcription factor FUS3
6j9b_D1e-352383422106B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.11e-155putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC41e-156Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0D9ZSF50.0A0A0D9ZSF5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G29470.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-38B3 family protein