PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G28420.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WOX
Protein Properties Length: 289aa    MW: 30678 Da    PI: 7.934
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G28420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-193494357
                     --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+t+t+eq+++L el+++   r p+ e+++++A+ l    +++ ++V++WFqN++a+e++
  OGLUM04G28420.1 34 TRWTPTTEQIKILRELYYScgIRSPNSEQIQRIAAMLrqygRIEGKNVFYWFQNHKARERQ 94
                     7*****************7668*************************************97 PP
2Wus_type_Homeobox114.64.9e-373396365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRWtPt+eQikiL+ely+ +G+r+Pn+e+iqri+a+L++yG+ie+kNVfyWFQN+kaRerqk+
    OGLUM04G28420.1 33 GTRWTPTTEQIKILRELYYsCGIRSPNSEQIQRIAAMLRQYGRIEGKNVFYWFQNHKARERQKK 96
                       69***************9978*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-122798IPR009057Homeodomain-like
PROSITE profilePS5007110.3982995IPR001356Homeobox domain
SMARTSM003897.3E-63199IPR001356Homeobox domain
CDDcd000867.86E-73496No hitNo description
PfamPF000461.2E-163494IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-73594IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDHMQQQQRQ QVGGGGGEEV AGRGGVPVCR PSGTRWTPTT EQIKILRELY YSCGIRSPNS  60
EQIQRIAAML RQYGRIEGKN VFYWFQNHKA RERQKKRLTT LDVTTTTAAA ADADASHLAV  120
LSLSPTAAGA TAPSFPGFYV GNGGAVQTDQ ANVVNWDCTA MAAEKTFLQD YMGVSGGGGA  180
AAAAPTPWAM TTTTREPETL PLFPVGGGGG DGAHRHAGHG GFPSNFQRWG SAAATTNTIT  240
VQQHLQQHNF YSSSSSQLHS QDGPAAGTSL ELTLSSYYCS CSPYPAGSM
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188940.0AB218894.1 Oryza sativa Japonica Group mRNA for OsWUS protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635371.11e-172WUSCHEL-related homeobox 1B
SwissprotQ7XM131e-173WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A0D9ZS110.0A0A0D9ZS11_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PF990.0A0A0E0PF99_ORYRU; Uncharacterized protein
STRINGOGLUM04G28420.10.0(Oryza glumipatula)
STRINGORUFI04G30190.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-34WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]