PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G27700.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 491aa    MW: 53055.6 Da    PI: 6.1623
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G27700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.9e-12142198155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  OGLUM04G27700.1 142 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 198
                      57*******************5444.2455536655.779999**************98 PP
2AP252.21.5e-16241292155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt+eeAa+a++ a+ k++g
  OGLUM04G27700.1 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 292
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.11E-18142208No hitNo description
SuperFamilySSF541717.85E-15142207IPR016177DNA-binding domain
PfamPF008473.4E-9142198IPR001471AP2/ERF domain
SMARTSM003801.6E-22143212IPR001471AP2/ERF domain
PROSITE profilePS5103217.57143206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-12143207IPR001471AP2/ERF domain
PRINTSPR003677.8E-6144155IPR001471AP2/ERF domain
CDDcd000189.75E-24241301No hitNo description
PfamPF008473.2E-11241292IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17241301IPR016177DNA-binding domain
SMARTSM003803.0E-32242306IPR001471AP2/ERF domain
PROSITE profilePS5103219.137242300IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17242300IPR001471AP2/ERF domain
PRINTSPR003677.8E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDMDTSHHYP WLNFSLAHHC EMEEERGAAA ELAAIAGAAP PPKLEDFLGG GCNGGSSGGA  60
CPPVQTTAPT AAELYESELK FLAAGFQLSG AAGAAPPVPA LLPAAALEQT DETKQLALTP  120
QAAVAPPPEQ KKAVDSFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD  180
KEEKAARAYD LAALKYWGPS TTTNFPVAEY EKELEEMKHM TRQEFVASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTEEEAA EAYDIAAIKF RGLNAVTNFE  300
IGRYNVESII SSNLPIGSMA GNRSTKAGLE LAPSSSADAI AATEANHTGV APPSTLAFTA  360
LPMKYDQADY LSYLALQHHQ QGNLQGLGFG LYSSGVNLDF ANANGNGAMS NCYTNVSLHE  420
QQQQHQHQHQ QEQQQDQQDD QSQSSNNSCG SIPFATPIAF SGSYESSMTA AGTFGYYPNV  480
AAFQTPIFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0621790.0AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633701.10.0AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-133AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9ZRR60.0A0A0D9ZRR6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G27700.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-124AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]