PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G24370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 212aa MW: 21545 Da PI: 6.9612 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 46.5 | 1.4e-14 | 65 | 98 | 35 | 68 |
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltgtsss 68 L++eLG++++++t++WLlqqa+pai +tgt+ s OGLUM04G24370.1 65 LTRELGHKSNGETVQWLLQQAEPAIVTATGTGVS 98 8******************************433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.6E-10 | 65 | 98 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MWGPPEDASA RREGEDPLSA AADIGGGGGG GGEEDAGARA EVELEQGPAH QGGRPGTTNP 60 DAGVLTRELG HKSNGETVQW LLQQAEPAIV TATGTGVSVD IPRALPPFPK LRPLQVAPPP 120 PPHVGCRRRA ARRVRGVRRC HIGFVTMFAG HAAAAMPGLE LGLSQDGHIG VLSARSLSQF 180 YHQVGGADAA DQLPHPAASS PTPSAAAGGR GG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 1e-176 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624510.2 | 3e-41 | LOW QUALITY PROTEIN: transcription factor TCP20 | ||||
TrEMBL | A0A0D9ZQA8 | 1e-146 | A0A0D9ZQA8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G24370.1 | 1e-147 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 9e-13 | TCP family protein |