PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G24100.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 277aa    MW: 32238 Da    PI: 7.4606
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G24100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89.6e-2621106186
         trihelix   1 rWtkqevlaLiearremeerlrrg....klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W  qe+++Li+ar eme+++ ++    +++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  OGLUM04G24100.1  21 QWGAQETRELIAARGEMERESAAAaaarRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 106
                      7********************975223369*************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00471884IPR001005SANT/Myb domain
CDDcd122031.34E-162089No hitNo description
PfamPF138372.9E-2221107No hitNo description
PROSITE profilePS500907.2822282IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEPGCGEGGG GGGGRDERVP QWGAQETREL IAARGEMERE SAAAAAARRS AKTLWEAVSA  60
RLRERGYRRT AEQCKCKWKN LVNRYKGKET SDPENGRQCP FFDELHAVFT ERARTMQQQL  120
LEPESGPSVK KKLKRPSGDL SSEDSDDEED GGGDSGDEKP IRSRKRKTAD KRQQSQRMAE  180
KSRTSISSIH ELLQDFLVQQ QRMDIQWHEM MERRSQERIV FEQEWRQSMQ KLEQERLMLE  240
HTWMEREEQR RMREEARAEK RDALLTTLLN KVLQEDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880753.10.0uncharacterized protein LOC4336887
TrEMBLA0A0D9ZQ740.0A0A0D9ZQ74_9ORYZ; Uncharacterized protein
STRINGOGLUM04G24100.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-27Trihelix family protein