PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G23760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 518aa MW: 53347.6 Da PI: 5.3216 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.9e-31 | 267 | 325 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OGLUM04G23760.1 267 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 325 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 33.109 | 261 | 327 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-30 | 264 | 327 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 264 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 266 | 326 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 268 | 325 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MPPCVWGSHT PLSLLSPPAA WAGERMEGDQ AGGDLTDIVR AGGGAMPGSV VVDLQSTAAE 60 WQLPAEPMLF PPPPSLSSTT DGCGAGGAAG ADIFGGGGGD LFSGLVDPFS SDYSSGADFL 120 DAMPDAMAKV GFDTAVGGGC GGGCGGGGGG GGGSGGHLLD MSRKPLLPRG MPMAAVGGLA 180 APRVMPSPLS PRAIRPYPPI SAGDMMKLGI TAGQAAGCAI DAAVAGMQMS SPRSGGIKRR 240 KNQARKVVCI PAPTAAGGRP SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA 300 RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSH HSKNSGGGGG SGSKGSQNDK 360 SQQQPSVKEE QKDQATTATT TTTSTITTTN SASPVVVKEE EAALAGSSEA LELERVMDTT 420 AAGVVDHSEL MDHVFSESYK PMIPETGQPD DFFADLAELE SDPMSLIFSK EYMEAKPSGG 480 DHAQEKAMAK ELDPFDMLDW STTTNSSAGS SFEQGKRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 5e-25 | 241 | 328 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 5e-25 | 241 | 328 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110912 | 0.0 | AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634477.1 | 0.0 | probable WRKY transcription factor 4 | ||||
TrEMBL | A0A0D9ZQ33 | 0.0 | A0A0D9ZQ33_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G23760.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2592 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-65 | WRKY DNA-binding protein 35 |