PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G23540.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 341aa    MW: 37146.9 Da    PI: 7.0407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G23540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-151564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv+ +k+ Gg+  +W+  +r  g++R++k+c++rw +yl
  OGLUM04G23540.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding51.62.1e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E+ l++++++ lG++ W+tIa ++  gRt++++k++w+++
  OGLUM04G23540.1  70 RGNFSDDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-20767IPR009057Homeodomain-like
PROSITE profilePS5129415.761064IPR017930Myb domain
SuperFamilySSF466892.36E-2712111IPR009057Homeodomain-like
SMARTSM007171.8E-101466IPR001005SANT/Myb domain
PfamPF002491.6E-121564IPR001005SANT/Myb domain
CDDcd001678.64E-91764No hitNo description
PROSITE profilePS5129426.12865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2568119IPR009057Homeodomain-like
SMARTSM007174.8E-1569117IPR001005SANT/Myb domain
PfamPF002492.0E-1470114IPR001005SANT/Myb domain
CDDcd001672.32E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW  60
TNYLRPDIRR GNFSDDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL  120
RMGIDPVTHQ RLPPDLLADG GGLGAASPLL SPPRPAAAAA LQPLLSAVAS LGSLDTALRQ  180
FQLLQHLLNS ITSSSSDVTA TAGLMATNLA ATNTMVNSSS NVASFQEQMN ALAHANYKPG  240
YLRDVVPSFP GQDMAPQLNS TNNSTPSTAP VLRSSAEPAD QCCNDAALVP ETYPREVAAS  300
VDHWKVQDFP SLEPLELPNL STLESDLDPF WKEILESSFR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27151197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432710.0AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635814.10.0transcription factor MYB41
SwissprotQ9S9Z23e-67MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D9ZQ040.0A0A0D9ZQ04_9ORYZ; Uncharacterized protein
STRINGOGLUM04G23540.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-68myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]