PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G22260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 23899.7 Da PI: 5.36 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 51 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr + grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+ +l+g OGLUM04G22260.1 51 PVYKGVRSRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAAMALRG 101 68****9666.9******9996..33.5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-12 | 51 | 101 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-27 | 52 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 52 | 110 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 52 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 52 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-8 | 53 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-26 | 53 | 111 | No hit | No description |
PRINTS | PR00367 | 5.6E-8 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEWAYYGSGY SSSGTPSPVG GDGDEDSYMT VSSAPPKRRA GRTKFKETRH PVYKGVRSRN 60 PGRWVCEVRE PHGKQRIWLG TFETAEMAAR AHDVAAMALR GRAACLNFAD SPRRLRVPPL 120 GAGHEEIRRA AVEAAELFRP APGQHNAAAE AAAAVAAQAT AASAELFADF PCYPMDGLEF 180 EMQGYLDMAQ GMLIEPPPLA GQSTWAEEDY DCEVNLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 50 | 108 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00453 | DAP | Transfer from AT4G25480 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606640 | 0.0 | AL606640.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY114110 | 0.0 | AY114110.1 Oryza sativa (japonica cultivar-group) apetala2 domain-containing CBF-1-like protein mRNA, complete cds. | |||
GenBank | AY785896 | 0.0 | AY785896.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1E (DREB1E) gene, complete cds. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855158 | 0.0 | CR855158.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147H17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635170.1 | 1e-161 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | A2XWL6 | 1e-162 | DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q8H273 | 1e-162 | DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A0D3FZ49 | 1e-160 | A0A0D3FZ49_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZPH9 | 1e-160 | A0A0D9ZPH9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0H4M3 | 1e-160 | A0A0E0H4M3_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PCW5 | 1e-160 | A0A0E0PCW5_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PP10 | 1e-160 | I1PP10_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM04G22260.1 | 1e-161 | (Oryza glumipatula) | ||||
STRING | ORUFI04G23890.1 | 1e-161 | (Oryza rufipogon) | ||||
STRING | OS04T0572400-00 | 1e-161 | (Oryza sativa) | ||||
STRING | ONIVA04G20840.1 | 1e-161 | (Oryza nivara) | ||||
STRING | ORGLA04G0192900.1 | 1e-161 | (Oryza glaberrima) | ||||
STRING | OBART04G22220.1 | 1e-161 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 5e-37 | dehydration response element B1A |
Publications ? help Back to Top | |||
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