PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20930.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 1018aa    MW: 107146 Da    PI: 6.579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012112129219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  OGLUM04G20930.1 112 VCKNCGKEFTSWEHFLEH 129
                      7**************999 PP
2zf-C2H212.20.00054653674223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C ++F ++  L  H+r+H
  OGLUM04G20930.1 653 TCKLCYRRFGNPRALAGHMRSH 674
                      6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.962345IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5362345IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-62345No hitNo description
PfamPF139120.00912445IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-6106130No hitNo description
SMARTSM00355140111131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141111138IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-7269292No hitNo description
SMARTSM003550.13270292IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-9270294IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242270297IPR007087Zinc finger, C2H2
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-7378405No hitNo description
SMARTSM003553.7383405IPR015880Zinc finger, C2H2-like
PfamPF139129.3E-11383406IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182383405IPR007087Zinc finger, C2H2
PROSITE patternPS000280385405IPR007087Zinc finger, C2H2
SMARTSM003550.099652674IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974652675IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-6653674No hitNo description
PfamPF139120.018654674IPR007087Zinc finger, C2H2
PROSITE patternPS000280654674IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-6818845No hitNo description
SMARTSM003550.026823845IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-11823847IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286823845IPR007087Zinc finger, C2H2
PROSITE patternPS000280825845IPR007087Zinc finger, C2H2
SMARTSM0035588887907IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-8887908IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1018 aa     Download sequence    Send to blast
MQPSPSSPRA PPPTAAQASG YKHFCRVCNK GFTCGSALGG HMRAHGVGDG DGLGADDDDD  60
DDDDSLGDEA VRRARGGADD PWNAGGPSSS GAATHVYELR TNPNRVTRSR QVCKNCGKEF  120
TSWEHFLEHG KCSSGEDDDD EDDVDRSLQP WSPSPEADGE EDPAPASGWL KGKRSRRCKG  180
TGVDLSPTPS ACAAGEEEDL ANCLVMLSSS KVYQAGVTEA EQPSSSSASK EHKRLITFME  240
PTTYVLDTVM ALPPPAPAPQ YVSTVPRGMF ECKACKKVFS SHQALGGHRA SHKKVKGCFA  300
AKLESNAAEV AEPSHHAEVA ERSEDNPGKA TSDARRNVHA SMDGDGNTGT SDAAAELSMA  360
IVPIEPPVAA LAAAPLKKKG KMHECSVCHR LFTSGQALGG HKRCHWLTSS SADHTASVPP  420
LADDLVPLSF RPMLDAPEPA LDLSIAANPP LLASAATVRP KVGGSSFHLD APPPVYIPSS  480
PAIPSQRNKA TATTGSQNAN DAVGLSTAAA EDEADSTTVK RARLSDLKDV SMAGETTPWL  540
QVGIGSSSRG GADDNDKEDF GRVTYPTSSQ GSGKVGDRDQ EQNKDSTKMT EKKKEGEARS  600
NSREIKNKMR LDLDGHNSER SADEMHACWP GTRSPKLCAS SSSIQALAMA KNTCKLCYRR  660
FGNPRALAGH MRSHSVAASR SQISSTSSAS TSVAVGDDDG GGDAKRPIQG YVLREKPKRR  720
VRLAESDFSD RESETEYYSS PPHGKRANTG SGDVEQVSSV SDAATSEEDV ALSLMMLSRD  780
TWPATPPPPP PYRLRGAGYD DGSDGGDAPP APAAAAAQKR TRFQCPACKK VFRSYQALGG  840
HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE GAKPHPHECP YCFRVFASGQ  900
ALGGHKRSQL CSAAAAAASG DDLPATIKSN GFIDLNLPAP FDDVELSAVS DPFLSSKPAI  960
LVPTVHGTGF GQTIGEIELL STFGGQVVIS MAHVSRPRGT VLFSSLGPPG LHRRVSGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375381LKKKGKM
2715721KPKRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0D9ZNY50.0A0A0D9ZNY5_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20930.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-27C2H2-like zinc finger protein