PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G19890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 265aa    MW: 28085.6 Da    PI: 7.7843
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G19890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY209.41.3e-64262176170
            YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleelk 76 
                        eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+      aa+   +  + +                        ++e+  
  OGLUM04G19890.1  26 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQAllsptsphglldevpsfqapaslMTEQAS 119
                      579*******************************************998665555554555555566668999*99999999988765444444 PP

            YABBY  77 veeenlksnvekeesastsvssekl......senedeevpr.vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                       + ++++s +++     ++ +++++       ++++ + p+ +p ++r  ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahf
  OGLUM04G19890.1 120 PNVSSITSSNSSCA---NNAPATSMasaankATQREPQQPKnAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHF 210
                      44444433332222...22222222233323333333444415569************************************************ PP

            YABBY 164 Pkihfgl 170
                      P+ihfgl
  OGLUM04G19890.1 211 PHIHFGL 217
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-7126217IPR006780YABBY protein
SuperFamilySSF470952.75E-7159210IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-4169209IPR009071High mobility group box domain
CDDcd000848.14E-5171207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSSAPETFSL DHLSQHQQQQ PPPLAEQEQL CYVHCNFCDT ILAVGVPCSS LFKTVTVRCG  60
HCANLLSVNL RGLLLPAAAS TANQLPFGQA LLSPTSPHGL LDEVPSFQAP ASLMTEQASP  120
NVSSITSSNS SCANNAPATS MASAANKATQ REPQQPKNAP SANRTSEKRQ RVPSAYNRFI  180
KDEIQRIKAS NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGLKKTGIQS QDGAGECMLF  240
KDGLYAAAAA AAAATAASSM GVTPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740170.0AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBankAK0702050.0AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634596.10.0protein YABBY 5
SwissprotQ01JG20.0YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF00.0YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A0D9ZNK40.0A0A0D9ZNK4_9ORYZ; Uncharacterized protein
STRINGOS04T0536300-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]