PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G15620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 605aa    MW: 62656.7 Da    PI: 4.7837
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G15620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.21.6e-18506538234
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT--- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpv 34 
                      +Dgy+WrKYGqK+vk se+prsYY+Ct+a+C  
  OGLUM04G15620.1 506 EDGYSWRKYGQKQVKHSEYPRSYYKCTHASCAG 538
                      8******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-17494537IPR003657WRKY domain
PROSITE profilePS5081117.006500541IPR003657WRKY domain
SuperFamilySSF1182906.28E-16501540IPR003657WRKY domain
SMARTSM007742.5E-11505557IPR003657WRKY domain
PfamPF031064.4E-14506537IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MTTTTATLDP PPPPLLIAGS LLDDDRDVGS AASSSPRWLP RARGSTIGSP PHRGGEGRGG  60
EATMRRKGNS SSPDDDDDCR NDDDYRDDDV GATTDGGGDV AALLPMAMTT ATTTAPMPVE  120
AAADGGGELS SAGEGGQRRV NLLPAKILSV YENHLFSPLL AVERLSAWKD GFGPEDEWII  180
EKLAVIAARR SSFVSEESLC SFPAAALVSL AIAHLGEMEG DIAMEEWKDS NHRGADYLMT  240
MPMQNFLADA FPPPELLEGE GGFEKHGLSV AVGSPPPPED GCSPLPLTPQ FGQKFGSGGG  300
GGGGGSLADR RARGGFSNVA RISVPYNQPA ADVSSAGAPS PYVTIPPGLS PTTLLESPVF  360
FSNAMGQASP TTGKLHMLGG ADDSNPIRFE SPPIEEGSGA FSFKPLNLAS SHYAAAEKTK  420
SLPNNQHQSL PISVKTEATS IQTAQDEAAA NQLMQPQFNG GKLSRAAPDN GGDGEGQPAE  480
GDAKVDSSSG AAAVAVVAAA AAAVAEDGYS WRKYGQKQVK HSEYPRSYYK CTHASCAGLK  540
YPMLAPPSVH SLLRHRQGGG MEAVVVPKAE VKQEAMPPAA AVAGAGRGAA VYQQAMSRVS  600
LGNQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418430.0AY341843.1 Oryza sativa (japonica cultivar-group) WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634497.10.0probable WRKY transcription factor 2 isoform X2
TrEMBLA0A0D9ZM050.0A0A0D9ZM05_9ORYZ; Uncharacterized protein
STRINGOGLUM04G15620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-21WRKY DNA-binding protein 2