PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G08780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23657.5 Da PI: 10.1186 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.3 | 3.5e-07 | 14 | 38 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvL 30 + +r vtf kR++g+ KK +E +L OGLUM04G08780.1 14 DVKRRVTFMKRLKGLTKKVSEFATL 38 679******************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.11E-14 | 1 | 81 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.493 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.003 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-7 | 14 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MAHKKVKLQR IIIDVKRRVT FMKRLKGLTK KVSEFATLFL MVYGEVEVQA TMVWPSVWEA 60 TRVLEHFNAM PHLDRYKKMT DLERILNEQV DKLKEQLHKV GHDANESETK LLLIEAINGR 120 RPSLEGLTIE QITSLGWMAN AHLKIVNDRL KKLHEEGLIP ASVSLSGTEV PTQREGWLMD 180 VARGIGSMGY NRFRGSSGSG TAGYNGDMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662986 | 0.0 | AL662986.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01, complete sequence. | |||
GenBank | AL663007 | 0.0 | AL663007.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CR855082 | 0.0 | CR855082.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139J17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634782.1 | 1e-133 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D9ZJG8 | 1e-152 | A0A0D9ZJG8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G08780.1 | 1e-153 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-17 | AGAMOUS-like 80 |