PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G38530.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 242aa    MW: 25571.1 Da    PI: 11.1016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G38530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-1882131255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +gr++AeIrdp     +  +r +lg+f+taeeAa+a++aa  +l+g
  OGLUM03G38530.1  82 RFRGVRQRP-WGRFAAEIRDP-----HlrRRLWLGTFDTAEEAAAAYDAASVRLRG 131
                      69*******.**********8.....556**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.80E-1881139No hitNo description
SMARTSM003807.9E-3282145IPR001471AP2/ERF domain
PfamPF008476.6E-1282131IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2082139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2882140IPR001471AP2/ERF domain
PROSITE profilePS5103222.64282139IPR001471AP2/ERF domain
PRINTSPR003673.5E-108394IPR001471AP2/ERF domain
PRINTSPR003673.5E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGTNPSLHEL AAGAAPRGRV VRILVRDADA TDSSSSEDEA VAVAQPRPRR RGKVGGGGGG  60
GGGGVKRRVM EAGAGEARPT ARFRGVRQRP WGRFAAEIRD PHLRRRLWLG TFDTAEEAAA  120
AYDAASVRLR GSSAATNFAS VRCYSLPPEL PKPTISPPEA AVRPITLPIG TAKPTLLPRV  180
KEEGESCGGR VKEEASSCEV QVLAAEPMWT MISGKRKKRS GCGTRVRAFH AVSARVEEVG  240
GA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1883138662ATERF1
3gcc_A1e-1883138662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330070.0AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391720.0AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0682520.0AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8294450.0CT829445.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA045M03, full insert sequence.
GenBankCU4062130.0CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628091.11e-139ethylene-responsive transcription factor CRF5
SwissprotQ9SUE32e-27CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A0D9ZEX41e-169A0A0D9ZEX4_9ORYZ; Uncharacterized protein
STRINGOGLUM03G38530.11e-170(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-19ERF domain protein 10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]