PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G37240.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 387aa    MW: 40531.8 Da    PI: 9.9356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G37240.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30312370259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  OGLUM03G37240.3 312 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 370
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-9263309IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-32303372IPR003657WRKY domain
PROSITE profilePS5081131.031306372IPR003657WRKY domain
SuperFamilySSF1182906.8E-27309372IPR003657WRKY domain
SMARTSM007742.7E-37311371IPR003657WRKY domain
PfamPF031062.0E-26313369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDGVEEANMA AVESSKKLVA ILSKSGDPFR LMAAVAETDE AVSRFGKVVT ILSNRVGHAR  60
ARLGKRRSSP PVDPGCLMDH PLAAAASSPA PSNGRLHFSS SAATAPPSPA TAAAASSAAN  120
VTPAVVDRSL FLETTLLDLN SRGAPAPAAS MAAAAKNSSK LAPAPMVSSS SSANHIQFQQ  180
PMKSFQFEQT PISDKFHIEM PRGVGSGGGK EVISFSFDNS VCTSSAATSF FTSISSQLIS  240
MSDAATNSAA AAAAPTTKKP SSCARKATAD DDAGGKCHCP KKKSVSISPP KPREKKVVTV  300
PAISDKVADI PSDNYSWRKY GQKPIKGSPH PRGYYRCSSK KDCPARKHVE RCRSDPAMLL  360
VTYENEHNHA QPLDLSVVQQ ATANPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-203093721274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0937130.0AC093713.6 Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.10.0protein WRKY1 isoform X2
TrEMBLA0A0D9ZEG70.0A0A0D9ZEG7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G37240.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127053036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.15e-40WRKY DNA-binding protein 11