PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G34520.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 186aa MW: 19578.2 Da PI: 8.3464 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 54.9 | 1.8e-17 | 22 | 60 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 p sYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ OGLUM03G34520.4 22 PTSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 60 88**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 1.0E-12 | 22 | 60 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.604 | 22 | 62 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-15 | 22 | 61 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-8 | 22 | 61 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-14 | 22 | 61 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSTTTTSIAG HLRAITAMVG PPTSYYRCTN SKCTVKKRVE RSSDDPSVVI TTYEGQHCHH 60 TASFQRGVGG AAVAAHIHGA AAVALAEQMS AFVSPPPQPH MLYGLPRLHP PSSSETAVSC 120 SMPTTTSLQE LNNGEGLQRP GYNNSPQAAV TIAQRPPSPS VPPAVSFDKG LLDDIVPPGI 180 TKTFFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631421.1 | 3e-99 | probable WRKY transcription factor 57 | ||||
Refseq | XP_015631422.1 | 3e-99 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A0D9ZDE8 | 1e-134 | A0A0D9ZDE8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G34520.1 | 1e-112 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-22 | WRKY DNA-binding protein 57 |