PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G33290.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 451aa    MW: 48537.1 Da    PI: 10.3275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G33290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31385443259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  OGLUM03G33290.1 385 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 443
                      69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-16338382IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.4E-34372444IPR003657WRKY domain
PROSITE profilePS5081129.757379445IPR003657WRKY domain
SuperFamilySSF1182901.07E-26382443IPR003657WRKY domain
SMARTSM007742.5E-38384444IPR003657WRKY domain
PfamPF031061.1E-26386442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDGADHPGAH FGGPARVLDS TSTAAALPCL YQPRGRERER EREGQPLPLL VVVVSTGGGL  60
SPGSSEGMEE ANREAVQSCH RVLTLLSSPH SQLVPNKDLA AATGEAVAKF CSVASRLNNG  120
NGLQGHARVR KIKKPLPIFD SNLFLESPAL AAATAAKTPN PSPITSLQLF PRYHQMEGSS  180
SKDPVRIPAQ FPKRLLLDNP AVDSDGPSRG PPLQLIQPVS VAPPAGTPHP ALPSAHLHFI  240
QQHQSYQRFQ LMQQMKMQSE MIKRSGLGEQ GGSNGGGKGV NLKFDSSNCT ASSSRSFLSS  300
LSMEGSIASL DGSRSSRPFQ LVSGSQTSST PELGLMQRRR CTGREDGSGR CTTGSRCHCA  360
KKRKLRIRRS IKVPAISNKV ADIPADEFSW RKYGQKPIKG SPHPRGYYKC SSVRGCPARK  420
HVERCVDDPS MLIVTYEGDH NHNRVLAAQP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-193814431475Probable WRKY transcription factor 4
2ayd_A5e-193824431272WRKY transcription factor 1
2lex_A4e-193814431475Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0D9ZCX30.0A0A0D9ZCX3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G33290.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.12e-63WRKY DNA-binding protein 39