PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27140.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 1176aa    MW: 133738 Da    PI: 9.008
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27140.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.6e-16126207997
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++  + +++p+kf++++gg    s+t+ l +++g ++ vk+  + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f   v ++
  OGLUM03G27140.2 126 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 207
                      333.456********888877..899****************..*********************************99999..66655 PP
2B3611.9e-19339438198
                      EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                      f+ ++++s+v+++ ++lv+pk++a++h   + es+t+tl+   ++++W   + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+  +  ef
  OGLUM03G27140.2 339 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 430
                      6677888888887788***********6..446779999985666****99977999999*************************874445666 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                        +v+++r
  OGLUM03G27140.2 431 GATVHLLR 438
                      66777666 PP
3B350.15.1e-16514596890
                      -HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      s+v++    ++++ ++fa+++ +++ e++   l++ +++ W+vk+  r +sg   ++t+GW++Fv++n+L+  D+++F+l++++++
  OGLUM03G27140.2 514 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFELMNDERA 596
                      555555112346689***999.3444455566777899*******..77777779*************************988766 PP
4B355.21.3e-17661745598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +  s +++++ +++p+kf++++ggk   s+t+ le+++g+++ vk+  +k+ +++vl+ GW+ Fv+a++++e+D+++F ++++s+f   v +++
  OGLUM03G27140.2 661 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFCHIENSRF--AVLILD 745
                      4..5556655.***********999..888****************..********************************999999..777766 PP
5B344.52.7e-14863961399
                      EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                      +++++s+v+++ + lv+ k++a ++   +++s+t+tl+   ++r+W  k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+  + ++f+ 
  OGLUM03G27140.2 863 TTMKHSNVNSHyASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDVCIFHLKnFNgRKFRA 954
                      78889999998889********8887..557789999985778*******77888888*************************98666688888 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      +v+++r+
  OGLUM03G27140.2 955 TVHLLRE 961
                      8888875 PP
6B355.31.2e-1710791172899
                       -HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS
               B3    8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93  
                       s+v++    +++l ++fa+++  ++ e+ tltl +  +g+ W+vk+  r +sg   ++t GW++Fv++n+L++ D+++F+l+++  ++  ++
  OGLUM03G27140.2 1079 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 1166
                       55555522345899*****993.33344.5555554999*******..777776689***********************996644555677 PP

                       EEEE-S CS
               B3   94 vkvfrk 99  
                       v+++r+
  OGLUM03G27140.2 1167 VHIIRH 1172
                       777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-20116215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-18117212IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125117210IPR003340B3 DNA binding domain
CDDcd100178.09E-15118208No hitNo description
SMARTSM010199.9E-8120210IPR003340B3 DNA binding domain
PfamPF023622.4E-14125206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-20331424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-23333426IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-21337438No hitNo description
SMARTSM010191.2E-7339441IPR003340B3 DNA binding domain
PfamPF023621.4E-19339439IPR003340B3 DNA binding domain
PROSITE profilePS5086313.197340440IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19499596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-17500594IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-12505594No hitNo description
SMARTSM010197.7E-4507604IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969507606IPR003340B3 DNA binding domain
PfamPF023622.2E-15511597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-19652749IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-21653753IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.238654747IPR003340B3 DNA binding domain
CDDcd100177.03E-16655745No hitNo description
SMARTSM010198.9E-8657747IPR003340B3 DNA binding domain
PfamPF023621.3E-15662745IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17853957IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-19856957IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-19859950No hitNo description
SMARTSM010190.0018861962IPR003340B3 DNA binding domain
PfamPF023622.3E-13862961IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251862962IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-2210641173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2010651173IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-1310701171No hitNo description
SMARTSM010199.5E-1110721173IPR003340B3 DNA binding domain
PROSITE profilePS5086312.84410721173IPR003340B3 DNA binding domain
PfamPF023626.1E-1610761172IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1176 aa     Download sequence    Send to blast
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL  60
NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF  120
HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF  180
VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS  240
THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD  300
PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR  360
YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF  420
HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA  480
DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ  540
TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDERASLGL  600
GKLGTHQASS STSGPEKRNC CSGKSPFKTT IPNPEMKKYC DCCKRYVDHS NGKMKCFHRQ  660
MSANFEHSMI IPNKFLDQFG GKISRTVELE SPKGNVYVVK VSKHMNKTVL QCGWEAFVDA  720
HQIEENDSLL FCHIENSRFA VLILDSDGCE KVFSCSGKRR ASGVQERNAD PIDVSSSTHN  780
DTAQSSGGER FARSESGSDS QHREEAKESS SSEHESSYDL VDPQIAPMPG YVLSRGTNLS  840
EAHEEKLDML VHEIRPEIPL YVTTMKHSNV NSHYASLVIA KHYACAYFPR TSQTITLKWH  900
GKNRKWHPKF YIRKDQVGYI LHGRWIDFVR HNHVKEGDVC IFHLKNFNGR KFRATVHLLR  960
ETIPHSFGEL HIPKRFESRN GRMRLKMTDD RRVSSTECRR GTMEPSTTNV KKEADNEQCN  1020
NGQGKRQEPL NFDVSVGSSK PYLTADRVSL TEEQFRKVEE NVHSIQSEGP IYVSIMNKSN  1080
VGTDGLYIIT LGRQFATRYL PEGEQTLTLL TTGTGKAWQV KMRPRSGDAR MFTLGWRDFV  1140
RDNRLQTEDI CLFQLMKNSE RGLAMTVHII RHSERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004510.0AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630232.20.0LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like
SwissprotQ851W40.0Y3205_ORYSJ; B3 domain-containing protein Os03g0620500
TrEMBLA0A0D9ZAM90.0A0A0D9ZAM9_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27140.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]