PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G27140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1194aa MW: 135795 Da PI: 9.0971 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.2 | 4.7e-16 | 126 | 207 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ + +++p+kf++++gg s+t+ l +++g ++ vk+ + + ++++l+ GW+ Fv+a++++e+D+++F+++++s+f v ++ OGLUM03G27140.1 126 ANF-GHSMTIPNKFLDHFGGT--LSRTIELVSPKGIVYIVKV--TEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRF--EVLIL 207 333.456********888877..899****************..*********************************99999..66655 PP | |||||||
2 | B3 | 61 | 2e-19 | 339 | 438 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 f+ ++++s+v+++ ++lv+pk++a++h + es+t+tl+ ++++W + +rk +++y+l ++Wk+Fv++n++kegD+++F+l+ + ef OGLUM03G27140.1 339 FVAIMKHSNVNSRrACLVIPKRYASAHF--PLESQTITLQRqGKNKKWYPMFYIRKDGSGYMLYGCWKNFVRDNHVKEGDMCIFHLTkFTgGEF 430 6677888888887788***********6..446779999985666****99977999999*************************874445666 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v+++r OGLUM03G27140.1 431 GATVHLLR 438 66777666 PP | |||||||
3 | B3 | 57.9 | 1.8e-18 | 514 | 606 | 8 | 99 |
-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS B3 8 sdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 s+v++ ++++ ++fa+++ +++ e++ l++ +++ W+vk+ r +sg ++t+GW++Fv++n+L+ D+++F+l+++ s+ +++v+++ OGLUM03G27140.1 514 SNVGTDglYIIIFGRQFATRY-LPEGEQTLTLLMTGKSNAWQVKM--RPRSGDaQMITTGWRHFVHDNHLQIEDICLFELMNDeSKLTMTVHII 604 555555112346689***999.3444455566777899*******..77777779**************************998********** PP -S CS B3 98 rk 99 r+ OGLUM03G27140.1 605 RR 606 98 PP | |||||||
4 | B3 | 55.2 | 1.3e-17 | 679 | 763 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + s +++++ +++p+kf++++ggk s+t+ le+++g+++ vk+ +k+ +++vl+ GW+ Fv+a++++e+D+++F ++++s+f v +++ OGLUM03G27140.1 679 M--SANFEHS-MIIPNKFLDQFGGK--ISRTVELESPKGNVYVVKV--SKHMNKTVLQCGWEAFVDAHQIEENDSLLFCHIENSRF--AVLILD 763 4..5556655.***********999..888****************..********************************999999..777766 PP | |||||||
5 | B3 | 44.5 | 2.7e-14 | 881 | 979 | 3 | 99 |
EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 +++++s+v+++ + lv+ k++a ++ +++s+t+tl+ ++r+W k+ +rk + +y+l + W +Fv+ n++kegD+++F+l+ + ++f+ OGLUM03G27140.1 881 TTMKHSNVNSHyASLVIAKHYACAYF--PRTSQTITLKWhGKNRKWHPKFYIRKDQVGYILHGRWIDFVRHNHVKEGDVCIFHLKnFNgRKFRA 972 78889999998889********8887..557789999985778*******77888888*************************98666688888 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ OGLUM03G27140.1 973 TVHLLRE 979 8888875 PP | |||||||
6 | B3 | 55.2 | 1.3e-17 | 1097 | 1190 | 8 | 99 |
-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..E CS B3 8 sdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..sefelv 93 s+v++ +++l ++fa+++ ++ e+ tltl + +g+ W+vk+ r +sg ++t GW++Fv++n+L++ D+++F+l+++ ++ ++ OGLUM03G27140.1 1097 SNVGTDglYIITLGRQFATRYL-PEGEQ-TLTLLTtGTGKAWQVKM--RPRSGDaRMFTLGWRDFVRDNRLQTEDICLFQLMKNseRGLAMT 1184 55555522345899*****993.33344.5555554999*******..777776689***********************996644555677 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ OGLUM03G27140.1 1185 VHIIRH 1190 777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-20 | 116 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 117 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.125 | 117 | 210 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.10E-15 | 118 | 208 | No hit | No description |
SMART | SM01019 | 9.9E-8 | 120 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-14 | 125 | 206 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-20 | 331 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-23 | 333 | 426 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-21 | 337 | 438 | No hit | No description |
SMART | SM01019 | 1.2E-7 | 339 | 441 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-19 | 339 | 439 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.197 | 340 | 440 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 499 | 607 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-19 | 500 | 607 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.18E-15 | 505 | 605 | No hit | No description |
SMART | SM01019 | 5.8E-7 | 507 | 607 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.871 | 507 | 607 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-18 | 511 | 607 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-19 | 670 | 767 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-21 | 671 | 771 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.238 | 672 | 765 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.04E-16 | 673 | 763 | No hit | No description |
SMART | SM01019 | 8.9E-8 | 675 | 765 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 680 | 763 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 871 | 975 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-19 | 874 | 975 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.74E-19 | 877 | 968 | No hit | No description |
SMART | SM01019 | 0.0018 | 879 | 980 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 880 | 980 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-13 | 880 | 979 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.7E-22 | 1082 | 1191 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.8E-20 | 1083 | 1191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.55E-13 | 1088 | 1189 | No hit | No description |
SMART | SM01019 | 9.5E-11 | 1090 | 1191 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.844 | 1090 | 1191 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-16 | 1094 | 1190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1194 aa Download sequence Send to blast |
MAQGPTYSPV FPFLLTSFFF PSYCHSPGRR WRRRGRQRAG EAVGGGRSCL AAQEGAETGL 60 NELARPRGRG FSLICITISS WNFCSVCKVH MYGWTRFQKK KSCDWSKRYV DHLNGKMKCF 120 HLQMSANFGH SMTIPNKFLD HFGGTLSRTI ELVSPKGIVY IVKVTEHMNK TILQCGWEAF 180 VDAHHIEEND SLLFRHIENS RFEVLILDSD GCEKVFTCAG IKKTSSVQER NAAPVDISRS 240 THDETTQSSG SKKFVRCQRA SDSQRGKTAK LAETSSSGES GEEGTDSSTS EDESSYELDD 300 PQMPPGRNYV LSRWTSLSEA QEEKVDMLVQ DIQPEIPVFV AIMKHSNVNS RRACLVIPKR 360 YASAHFPLES QTITLQRQGK NKKWYPMFYI RKDGSGYMLY GCWKNFVRDN HVKEGDMCIF 420 HLTKFTGGEF GATVHLLRET KSGSLGSFHT SHKRFDLRDG RTWPKVTGAR RVSSRPYLTA 480 DRVSLTEEQV RKVEEVVHSI QSEGPMYVSI MNKSNVGTDG LYIIIFGRQF ATRYLPEGEQ 540 TLTLLMTGKS NAWQVKMRPR SGDAQMITTG WRHFVHDNHL QIEDICLFEL MNDESKLTMT 600 VHIIRRNEKS YPGASLGLGK LGTHQASSST SGPEKRNCCS GKSPFKTTIP NPEMKKYCDC 660 CKRYVDHSNG KMKCFHRQMS ANFEHSMIIP NKFLDQFGGK ISRTVELESP KGNVYVVKVS 720 KHMNKTVLQC GWEAFVDAHQ IEENDSLLFC HIENSRFAVL ILDSDGCEKV FSCSGKRRAS 780 GVQERNADPI DVSSSTHNDT AQSSGGERFA RSESGSDSQH REEAKESSSS EHESSYDLVD 840 PQIAPMPGYV LSRGTNLSEA HEEKLDMLVH EIRPEIPLYV TTMKHSNVNS HYASLVIAKH 900 YACAYFPRTS QTITLKWHGK NRKWHPKFYI RKDQVGYILH GRWIDFVRHN HVKEGDVCIF 960 HLKNFNGRKF RATVHLLRET IPHSFGELHI PKRFESRNGR MRLKMTDDRR VSSTECRRGT 1020 MEPSTTNVKK EADNEQCNNG QGKRQEPLNF DVSVGSSKPY LTADRVSLTE EQFRKVEENV 1080 HSIQSEGPIY VSIMNKSNVG TDGLYIITLG RQFATRYLPE GEQTLTLLTT GTGKAWQVKM 1140 RPRSGDARMF TLGWRDFVRD NRLQTEDICL FQLMKNSERG LAMTVHIIRH SERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100451 | 0.0 | AK100451.1 Oryza sativa Japonica Group cDNA clone:J023090P20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630232.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing protein Os03g0620500-like | ||||
Swissprot | Q851W5 | 0.0 | Y3204_ORYSJ; B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A0D9ZAM8 | 0.0 | A0A0D9ZAM8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G27140.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-17 | B3 family protein |
Publications ? help Back to Top | |||
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