PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27130.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 838aa    MW: 94251.9 Da    PI: 8.6946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27130.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.41.4e-14371161297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  OGLUM03G27130.2  37 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                      456799******888888..5669***************..*******************************9986655..66665 PP
2B340.74.4e-132463281698
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v++++
  OGLUM03G27130.2 246 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFAFTVHLLQ 328
                      799999999997..456779*****66659******66777777*************************8766589988888876 PP
3B344.43e-144445201691
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l+++++ +
  OGLUM03G27130.2 444 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLT 520
                      6788999999952.33.3346665.569*******97754433334478***********************98755553 PP
4B349.76.8e-165235971797
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++p +f++++ggk   + t++le+++g  + v++  + + +++vl+ GW+ Fv+a+++k+gD+++F+++++s+f   v+++
  OGLUM03G27130.2 523 IIPDRFVNHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTVLQCGWEAFVDAHHIKVGDSLLFRHIENSCF--EVMIL 597
                      79*****888888..5669***************..**************************************..66665 PP
5B3438.2e-147498321496
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L++gD+++++l+++ s+ +++v+ 
  OGLUM03G27130.2 749 CQLELGARYAAAVHLPDRR--QAVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLCVGDICLLELKKHeSKLTMTVHT 832
                      7777888888888777555..5899999*********..555555224445557**********************877888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2023121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13926119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-1727120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-1627117No hitNo description
SMARTSM010191.5E-729119IPR003340B3 DNA binding domain
PfamPF023628.5E-1337115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-18223329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-18223328IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011230330IPR003340B3 DNA binding domain
CDDcd100175.63E-18230325No hitNo description
PROSITE profilePS5086310.292231330IPR003340B3 DNA binding domain
PfamPF023622.8E-11246328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17419523IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-14423512No hitNo description
SMARTSM010191.6E-5429519IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111429527IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-15442523IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-11444521IPR003340B3 DNA binding domain
SMARTSM010195.9E-5520600IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-19522605IPR015300DNA-binding pseudobarrel domain
CDDcd100176.63E-17523598No hitNo description
PfamPF023623.2E-14523597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-18524602IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.151539600IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16725831IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15726831IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-12731831No hitNo description
PROSITE profilePS508639.982736834IPR003340B3 DNA binding domain
SMARTSM010190.011741837IPR003340B3 DNA binding domain
PfamPF023622.7E-11749833IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI  360
EEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS  420
EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR  480
RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEIIPDRFVN HFGGKIPGTI  540
KLESPNGILY VVEVTECMNK TVLQCGWEAF VDAHHIKVGD SLLFRHIENS CFEVMILDSD  600
GCERVFSCAG IKTNSCVHDK TVDPVDTSGR SSDDTAQPSR SERFARCQRD TSNDRRNTAS  660
LTAVSSSSEE SENVSLKSNR NGVSDESQES EDSEGPAGPP YILSWKSKSR LSSLQKKIIK  720
EKVRSIQSEV PIYVAIMNKS NIGLTSSPCQ LELGARYAAA VHLPDRRQAV VLQRMGQRWD  780
TVMQTKSGRC TTRRFLINGW SRFVRDNRLC VGDICLLELK KHESKLTMTV HTIFSQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512518LKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0D9ZAM70.0A0A0D9ZAM7_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27130.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein