PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G27130.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 762aa    MW: 85777.1 Da    PI: 9.304
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G27130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-14371161297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + + +++p +f++++ggk   + t++le+++g  + v++  + + ++++l+ GW+ Fv+a+++keg++++F+++++s+    v ++
  OGLUM03G27130.1  37 SMHSMIMPDRFVSHFGGK--IPGTIKLESPNGILYVVEV--TECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRY--EVLIL 116
                      456799******888888..5669***************..*******************************9986655..66665 PP
2B340.83.8e-132463281698
                      EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                      lv++ ++a+ h   ++e+ t+tl+ +s  ++W  ++  r  ++ ++l++ W++Fv++n L+e D+++F  ++  ++f ++v++++
  OGLUM03G27130.1 246 LVISSRYASVHF--PRETATITLQRPSKrKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGgRNFAFTVHLLQ 328
                      799999999997..456779*****66659******66777777*************************8766589988888876 PP
3B344.82.3e-144445211694
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      l l+ ++a+++   +k +++tl+l + +g  W+++l +     k++r +lt+GW++F+++n+L++gDf++F+l+++++   ++
  OGLUM03G27130.1 444 LELSSRYAASYlP-DK-NHQTLVL-QCKGMIWQINLVVrrrYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKL--TM 521
                      6788899999952.33.3346665.569*******97754433334478***********************9875554..44 PP
4B343.27.2e-146737561496
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                      ++l l  ++a++  ++ ++  + ++ ++ g++W+  +  + ksgr     +l +GW++Fv++n+L++gD+++++l+++ s+ +++v+ 
  OGLUM03G27130.1 673 CQLELGARYAAAVHLPDRR--QAVVLQRMGQRWDTVM--QTKSGRcttrRFLINGWSRFVRDNRLCVGDICLLELKKHeSKLTMTVHT 756
                      7777888888888777555..5899999*********..555555224445557**********************877888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.69E-2023121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.13926119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-1727120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.41E-1627117No hitNo description
SMARTSM010191.5E-729119IPR003340B3 DNA binding domain
PfamPF023627.5E-1337115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-18223329IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18223328IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0011230330IPR003340B3 DNA binding domain
CDDcd100173.11E-18230325No hitNo description
PROSITE profilePS5086310.292231330IPR003340B3 DNA binding domain
PfamPF023622.4E-11246328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-17419523IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-14423512No hitNo description
SMARTSM010192.2E-8429527IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111429527IPR003340B3 DNA binding domain
SuperFamilySSF1019363.27E-15442523IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-12444523IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-16649755IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-15650755IPR015300DNA-binding pseudobarrel domain
CDDcd100176.30E-13655755No hitNo description
PROSITE profilePS508639.982660758IPR003340B3 DNA binding domain
SMARTSM010190.011665761IPR003340B3 DNA binding domain
PfamPF023622.4E-11673757IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MAGGNTHRKK SCACCKEYLE HLGGKMRCFL RRMAADSMHS MIMPDRFVSH FGGKIPGTIK  60
LESPNGILYV VEVTECMNKT LLQCGWEAFV DAHNIKEGES LLFRHIENSR YEVLILDSDD  120
CEKVFSCAGI RNGSCVQDKT VDPVDSSGSS SNDTTQSSRS RNTENLTAMC SSSEKSGEDS  180
PSGYEFHESV EPQTPSGSDY VLSRRTYLSE AQKERVVAHI QDIQPEITVF VAVMKKCNLQ  240
SPAPYLVISS RYASVHFPRE TATITLQRPS KRKKWYPRFY KRIDKSDHML RGQWQNFVHD  300
NCLQEEDICL FVPTKGGRNF AFTVHLLQAE ATHSRDGTDV HKIGSSQNKR NSKMASQVHI  360
EEAPGGDVSS ESNKHGVSHE SLESEDSDGP SEPPYISSMR RRLSQLQKKT VEEKVRAIQS  420
EIPICVATIS KLAGSGGKGK FRGLELSSRY AASYLPDKNH QTLVLQCKGM IWQINLVVRR  480
RYTKGKRWFL TAGWRKFAHD NRLRVGDFCL FELKKKKKLT MEIIPDRFVN HFGGKIPGTI  540
KLESPNDPVD TSGRSSDDTA QPSRSERFAR CQRDTSNDRR NTASLTAVSS SSEESENVSL  600
KSNRNGVSDE SQESEDSEGP AGPPYILSWK SKSRLSSLQK KIIKEKVRSI QSEVPIYVAI  660
MNKSNIGLTS SPCQLELGAR YAAAVHLPDR RQAVVLQRMG QRWDTVMQTK SGRCTTRRFL  720
INGWSRFVRD NRLCVGDICL LELKKHESKL TMTVHTIFSQ QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512518LKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1072060.0AC107206.4 Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629380.10.0B3 domain-containing protein Os03g0619800
RefseqXP_015629381.10.0B3 domain-containing protein Os03g0619800
SwissprotQ6AV210.0Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A0D9ZAM60.0A0A0D9ZAM6_9ORYZ; Uncharacterized protein
STRINGOGLUM03G27130.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-12B3 family protein