PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G19270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 28611.9 Da PI: 9.7587 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.4e-11 | 132 | 183 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 +WT+eEd l+++ ++ G ++W+++a+ m +R++ qc++rw + OGLUM03G19270.1 132 AWTPEEDACLARLAAENGFRHWRRVAEGMAaarsgrrRRRSPGQCRDRWSEH 183 7************************************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 22 | No hit | No description |
SuperFamily | SSF48113 | 7.23E-13 | 23 | 74 | IPR010255 | Haem peroxidase |
PROSITE profile | PS50873 | 12.678 | 24 | 70 | IPR002016 | Haem peroxidase, plant/fungal/bacterial |
Gene3D | G3DSA:1.10.520.10 | 4.5E-14 | 25 | 70 | No hit | No description |
PROSITE pattern | PS00436 | 0 | 56 | 67 | IPR019794 | Peroxidase, active site |
PROSITE profile | PS51294 | 15.203 | 125 | 188 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-9 | 129 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-14 | 132 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-5 | 132 | 184 | No hit | No description |
SuperFamily | SSF46689 | 1.03E-13 | 132 | 206 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.6E-12 | 133 | 200 | No hit | No description |
PROSITE profile | PS50090 | 6.133 | 185 | 237 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0098869 | Biological Process | cellular oxidant detoxification | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004601 | Molecular Function | peroxidase activity | ||||
GO:0020037 | Molecular Function | heme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAASAMKLAM AVACALALAS ACHGLQLGYY KQSCPHVEAI VRDEVKKFVY KDAGIGAGLI 60 RLVFHDCFVE QPATEKKIDV IAMALQGMEQ EAAGQPPASA AFPSSAEEAA AAAASPTSGG 120 KRIVLRIRLP PAWTPEEDAC LARLAAENGF RHWRRVAEGM AAARSGRRRR RSPGQCRDRW 180 SEHLARDVYH RPFTADDDAE LARLLLKRDG ERSWKDIGRA AYCRTSRGMR RRWRELRDSD 240 AFLRKLWCPP PPPMQPSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213125 | 0.0 | AC213125.2 Oryza glaberrima clone OG_BBa0015M04, complete sequence. | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645625.1 | 2e-59 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A0D9Z7V5 | 0.0 | A0A0D9Z7V5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G19270.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8360 | 13 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-06 | myb domain protein r1 |