PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G15660.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 200aa    MW: 22720.4 Da    PI: 8.4681
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G15660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.51.7e-202384259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59
                     +Dg++WrKYG K++++ +fpr YYrCt++   +Cp++k++++++ +dp +  +tY +eH+++
  OGLUM03G15660.2 23 NDGHQWRKYGEKKINNCNFPRYYYRCTYKdnmNCPATKQIQQKDySDPPLYSVTYYNEHTCN 84
                     8***************************99999*******976538**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-231084IPR003657WRKY domain
SuperFamilySSF1182905.89E-221684IPR003657WRKY domain
PROSITE profilePS5081115.6861786IPR003657WRKY domain
SMARTSM007747.8E-312285IPR003657WRKY domain
PfamPF031065.7E-242383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MFLKKTCRKE KRMRKVDTFA PHNDGHQWRK YGEKKINNCN FPRYYYRCTY KDNMNCPATK  60
QIQQKDYSDP PLYSVTYYNE HTCNSAFLPL SPSEFQLQTA SGKAVSICFE SSGAQEPMTN  120
ASSPSSSAAR RSTPSENKNQ PLPRHSEAYS WGVGVVEQKP SCTELQSCST ECQDAFSAGT  180
IPEETVDAGR FGSIRFFHFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-142383968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016530.0AK101653.1 Oryza sativa Japonica Group cDNA clone:J033057D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631650.11e-145probable WRKY transcription factor 35
TrEMBLA0A0D9Z6J31e-149A0A0D9Z6J3_9ORYZ; Uncharacterized protein
STRINGOGLUM03G15660.11e-144(Oryza glumipatula)
STRINGORUFI03G16080.11e-144(Oryza rufipogon)
STRINGOS03T0321700-011e-144(Oryza sativa)
STRINGONIVA03G16490.31e-144(Oryza nivara)
STRINGOPUNC03G15030.51e-144(Oryza punctata)
STRINGORGLA03G0148400.11e-144(Oryza glaberrima)
STRINGOBART03G15470.11e-144(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-19WRKY DNA-binding protein 46