PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM03G09560.3

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 767aa MW: 83130.3 Da PI: 5.3174

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM03G09560.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.3e-11	594	642	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OGLUM03G09560.3 594 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 642 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.873	1	89	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	1.1E-6	21	100	No hit	No description
PROSITE profile	PS50181	11.405	338	384	IPR001810	F-box domain
SuperFamily	SSF81383	1.83E-13	338	393	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	5.7E-10	341	392	No hit	No description
Pfam	PF12937	4.3E-6	343	385	IPR001810	F-box domain
SMART	SM00256	1.5E-5	344	384	IPR001810	F-box domain
SuperFamily	SSF47459	4.19E-17	589	657	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.74E-11	589	646	No hit	No description
PROSITE profile	PS50888	15.796	591	641	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	591	658	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-9	594	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	597	647	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR 60 SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG 120 AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT 180 KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT 240 LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD 300 EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD 360 LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG 420 NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQMYSPPCS AAASSQGHCF 480 AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK 540 GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE 600 RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN 660 SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA 720 RAAHLASFPQ QRGLIWDEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MKLRLRSMDQ RGGAGAAAAE THRVQLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR  60
SEELLTPDPS ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG  120
AAGPTKSPVE SGSSSSMPQA LCTNPGLPVA SDPHHPPPDV VMAEAFAAIK SKSSLVVGAT  180
KREMENVGGA DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT  240
LPELVEALPA VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD  300
EVSTAEEREI HELWRVLKDE MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD  360
LARVQCTCKE LRDLAADDNL WKKKCEMEFN TQDTCGCMMC KCIYSDQRKD IVLADKYTRG  420
NYMQKPVTQP GRWLIILVFH SLLCQYITIG LSLLWYHLVD LVQMYSPPCS AAASSQGHCF  480
AVGANQLASL DLAMDFDEPI LFPVHNASLQ EGIQFYNPTG DTQLSRNMSI DKCLKGSKRK  540
GSGEGSSSLH SQEETGEMPQ RELSMEHAGE KAGDADASRE EYVHVRAKRG QATNSHSLAE  600
RFRREKINER MKLLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSTISPELN  660
SDLDLQDILC SQDARSAFLG CSPQLSNAHP NLYRAAQQCL SPPGLYGSVC VPNPADVHLA  720
RAAHLASFPQ QRGLIWDEEL RNIAPAGFAS DAAGTSSLEN SDSMKVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0D9Z4D0	0.0	A0A0D9Z4D0_9ORYZ; Uncharacterized protein
STRING	ORGLA03G0090200.1	0.0	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-45	bHLH family protein