PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G08230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 542aa MW: 60465.8 Da PI: 8.0516 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.8 | 9.8e-19 | 308 | 394 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ l lp kfa+e g + ++ l++ e r W+vk+ + sg ++l++GW+eF++a++L++g f+vF++dg f +v+vf++ OGLUM03G08230.2 308 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 394 455669**********999999999***************77999999**************************998888..9999986 PP | |||||||
2 | B3 | 46.2 | 7.9e-15 | 443 | 515 | 14 | 87 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + l +p +f e+h++ +e +++l +g+ W+v+l++ r +++r+ ++ GW +F+ +ngL +gD++ F++ ++ OGLUM03G08230.2 443 QYLNVPMEFQEAHEYARRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAVGDTCFFRVLRE 515 55889********988554..4555.5599*******9876667777*************************6654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 5.03E-41 | 16 | 220 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.3E-23 | 25 | 123 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00364 | 440 | 43 | 62 | No hit | No description |
SMART | SM00369 | 14 | 45 | 66 | IPR003591 | Leucine-rich repeat, typical subtype |
PROSITE profile | PS51450 | 7.958 | 45 | 66 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 5.263 | 68 | 89 | IPR001611 | Leucine-rich repeat |
SMART | SM00364 | 180 | 89 | 108 | No hit | No description |
SMART | SM00369 | 1 | 89 | 111 | IPR003591 | Leucine-rich repeat, typical subtype |
Pfam | PF13855 | 8.1E-8 | 90 | 148 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 7.165 | 91 | 112 | IPR001611 | Leucine-rich repeat |
SMART | SM00364 | 20 | 112 | 131 | No hit | No description |
SMART | SM00369 | 9.9 | 112 | 134 | IPR003591 | Leucine-rich repeat, typical subtype |
PROSITE profile | PS51450 | 6.349 | 114 | 135 | IPR001611 | Leucine-rich repeat |
Gene3D | G3DSA:3.80.10.10 | 1.4E-23 | 124 | 230 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00364 | 44 | 135 | 154 | No hit | No description |
SMART | SM00369 | 7.9 | 135 | 158 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00364 | 52 | 158 | 177 | No hit | No description |
PROSITE profile | PS51450 | 6.249 | 160 | 181 | IPR001611 | Leucine-rich repeat |
SMART | SM00364 | 230 | 181 | 200 | No hit | No description |
SMART | SM00369 | 0.016 | 181 | 204 | IPR003591 | Leucine-rich repeat, typical subtype |
PROSITE profile | PS51450 | 6.534 | 183 | 204 | IPR001611 | Leucine-rich repeat |
SuperFamily | SSF101936 | 8.24E-18 | 298 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.24E-20 | 298 | 393 | No hit | No description |
PROSITE profile | PS50863 | 14.156 | 298 | 395 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-20 | 299 | 394 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.8E-16 | 300 | 395 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 308 | 394 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 426 | 536 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-15 | 427 | 518 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.8E-5 | 428 | 537 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.351 | 430 | 537 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-12 | 444 | 515 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.85E-11 | 445 | 511 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP 60 QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI 120 SQNSLSRLPK SVGDLRNMLL LNVSDNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN 180 LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF 240 DKQIDSNVMM SSTALDEGID LNYQKTNSLA HSACCPDLLQ ILAQRMEDQM ANVRLTDFEF 300 FRIILPGSSK TKLKLPYKFA RELGDRELRE ARLRVAGEGR RPWDVKVFDD DVSGDVYLGR 360 GWQEFARAHD LRDGHFLVFR YDGAAAFTVT VFDETIGSSS SSDSSDAAAA AAATAAAEGV 420 GDVALSQFAV TLRQCNLEDK QAQYLNVPME FQEAHEYARR EKVVLRMRGE AWTVRLKHSR 480 RERGQRTAFR YGWHRFCVDN GLAVGDTCFF RVLREGDLRR RGAADDHVLK VAVRKADGTT 540 LE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4u06_A | 5e-27 | 13 | 229 | 16 | 283 | LIC10831 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT834521 | 0.0 | CT834521.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN128K08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9Z3U5 | 0.0 | A0A0D9Z3U5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G08230.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 4e-16 | B3 family protein |