PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G02370.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 271aa    MW: 28999.5 Da    PI: 6.8437
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G02370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.8e-20188221134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C+tt+Tp+WR gpdg++tLCnaCG++yr  +
  OGLUM03G02370.1 188 CGHCQTTETPQWRVGPDGPSTLCNACGIRYRMDH 221
                      9******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.6E-14180231No hitNo description
PROSITE profilePS5011412.558182220IPR000679Zinc finger, GATA-type
SMARTSM004013.2E-18182236IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15186221IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-15187235No hitNo description
PfamPF003206.3E-18188222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRKPTPYVSL HDVVAFDFVD GDVPFDDLVD GEGLCCPDDP FEEVMRCLSA VDDPFLAAFK  60
LDCSPPTPAA DADVDSRSEE HMHADVGGGL DLQRAVGGGD EKAGTPSTID DVPWLQASAV  120
ARKPRRAPAA VRKRVWSLVS PQLATAAAAA VDNSRDEVSS GGGGGGEGGE HCSRPAKRRR  180
KCGEEKRCGH CQTTETPQWR VGPDGPSTLC NACGIRYRMD HLLPEYRPST SPGFGSDGYS  240
NRHRKVVKLR EKKRKKAMLA ATATALTSGP V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0986930.0AC098693.3 Oryza sativa Japonica Group chromosome 3 clone OJ1004C08, complete sequence.
GenBankAP0006150.0AP000615.1 Oryza sativa Japonica Group genomic DNA, chromosome 3, clone:P0043E01.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629442.10.0GATA transcription factor 6
TrEMBLA0A0D9Z1M10.0A0A0D9Z1M1_9ORYZ; Uncharacterized protein
STRINGOGLUM03G02370.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-18GATA transcription factor 11