PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G38880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 612aa    MW: 67427.5 Da    PI: 4.4275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G38880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49161521128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyW 83 
                      l+pGfrFhPtdeelv++yL++++ g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +          g+r+nrat +gyW
  OGLUM02G38880.1  16 LAPGFRFHPTDEELVSYYLRRRILGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYW 108
                      579***************************.99***************5448999999***********99777777665567*********** PP

              NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k+tgkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl
  OGLUM02G38880.1 109 KTTGKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 152
                      ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5511170IPR003441NAC domain
PROSITE profilePS5100555.4816170IPR003441NAC domain
PfamPF023654.4E-2718152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSQSPPDSSS AAAVPLAPGF RFHPTDEELV SYYLRRRILG RRLRIDAIAE VDLYRLEPWD  60
LPSLSRIRSR DAQWYFFARL DRKVTGAGAG GRGGPGNRTN RATPRGYWKT TGKDRDVHHR  120
GKLVGMKKTL VFHSGRAPKG QRTNWVMHEY RLLDADGTQD LHVVCRIFQK NGSGPQNGAQ  180
YGAPYLEEDW EEEDDAIENM PASGAFAEMA ATQEYQPEIT PVKAQGSNEE TNGGGYSCDV  240
FSLDEILQEP ENVCKNEEQN AIDDKFTIAE LSGYPRQDDG YVGENGPVNW IDPSNGDNTN  300
WPLRAYSTQN HVNGTLSADG FFDTVNGTNS YSGQQQVCPS DNQNLYLQDD GLTSSHQVGD  360
NMPFYDASSN HKWVDGKDDY LNLNDLLYPP AENQPLFDAG DDLMAYFDAT EDDFKFDIMG  420
TEDSNSQLPD MSNFVQKDDN NNKFTLDGIS NTALYGASSS GSHGNMYPDT AVPDMPMDDT  480
VDKSFGKRLA SMLGSIPAPP AMASEFPPST GKSVVPLSAV NPSSSIRVTA GIIQLGGITF  540
TGSTERLQKN GDFNLLLSFT VEGDVSTKSI GFEPDTQMST TPMVLRSGMY LFFVSAMILM  600
LSYKVGLCIY SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-4371526140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
GenBankAY2244330.0AY224433.1 Oryza sativa (japonica cultivar-group) isolate 20620 NAC-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624689.10.0NAC domain-containing protein 78 isoform X1
TrEMBLA0A0D9Z0B60.0A0A0D9Z0B6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G38880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-59NAC domain containing protein 2