PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G35260.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 317aa    MW: 34600.9 Da    PI: 4.4881
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G35260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.4e-15135226298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++lsk+
  OGLUM02G35260.1 135 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSKS 222
                      699******************99999..678899**********8653899******************99..5554..5799*********** PP

           DUF573  95 iWgs 98 
                      +Wgs
  OGLUM02G35260.1 223 VWGS 226
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-21136225IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPPVASSE ETASGSDSDE SEEEEESPLV QPAPVVSNKG AESDSSGEEE  60
SEEEEEEEDL VRSSATKSRD PPQENREEDD SSDEEEDESS ESEKAEAPPP PPLNPAPKQG  120
AEGNGPKVSS PKRQAFHRIW STEDEVRILE ALAAHRREHG SLPQTDALIA TLAGSLDNTG  180
YGRKELQGKV STLKRRYEST AKKKGDLPSK GHDRRLYDLS KSVWGSEAAA AAANGTTTAP  240
REFGEMCELY PHLAEEVKLL EAAHPGLFKR DFGKLDDDKA HALDMKIKKQ RIAEISVVLR  300
RGDLTKEVTK VLTELVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668230.0AK066823.1 Oryza sativa Japonica Group cDNA clone:J013075K03, full insert sequence.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-142probable tyrosine-protein phosphatase DSP2
TrEMBLA0A0D9YZ040.0A0A0D9YZ04_9ORYZ; Uncharacterized protein
STRINGOGLUM02G35260.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.16e-09DNA-binding storekeeper protein-related transcriptional regulator