PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G32070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 2082aa MW: 232303 Da PI: 7.3093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.9e-13 | 1842 | 1889 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv G +W+++++ g+ R++k+c++rw +yl OGLUM02G32070.1 1842 KGPWTADEDQKLVTFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 1889 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 1898 | 1939 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++l +d+++qlG++ W++Ia++++ gRt++++k++w+++ OGLUM02G32070.1 1898 LSEEEEKLVIDLHEQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 1939 599****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF11573 | 9.8E-38 | 563 | 1290 | IPR021629 | Mediator complex, subunit Med23 |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 1833 | 1890 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.881 | 1837 | 1889 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-25 | 1839 | 1936 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-11 | 1841 | 1891 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-12 | 1842 | 1889 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-7 | 1844 | 1889 | No hit | No description |
PROSITE profile | PS51294 | 27.855 | 1890 | 1944 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 1891 | 1945 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-16 | 1894 | 1942 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 1898 | 1939 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-12 | 1899 | 1940 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2082 aa Download sequence Send to blast |
MQLRLHIPPS VDLFPFPQTA RAHQVRSATL LNPRSEQAHR TTPVAGDGSG ASAMDGAHGQ 60 RQPMSPAISA SAVLPQQRQM QLHHHHHHPA RSAIADLFTL YLGMNSKQRI EDPTRETSNK 120 LQKRVTAMNR DLPPRDEQFI SDFEQLHMQF PDQEQLQAVT ESVLISFVLQ CSSHAPQSEF 180 LLFATRCLCA RGHLRWDSLL PSLLNVVSSV EVPMGQGVSV TTGGPATSSS SAIAVPNAPS 240 FHPSNPTSPL SAMNTIGSPT QSGIDQPIGA NVSPIKGAEF SSPGQLGLTA RGDQSRRGAE 300 ISYLHHLSCR IILAGLESDL KPATHAVIFQ HMVNWLVNWD QRPHGVDQAD ALQLQTLRLE 360 RPLHEWMHLC LDVIWILVNE DKCRVPFYEL VRSNLQFLEN IPDDEALVSI IMEIHRRRDM 420 VCMHMQMLDQ HLHCPTFATH RFLSQSYPSI AGESVANLRY SPITYPSVLG EPLHGEDLAN 480 SIPKGGLDWE RALRCLRHAL CTTPSPDWWR RVLLVAPCYR QHPQQSSTPG AVFSPDMIGE 540 AVADRTIELL RLTNSETQCW QDWLLFADIF FFLMKSGCID FLDFVDKLAS RVTNSDQQIL 600 RSNHVTWLLA QIIRIEIVMN TLSSDPRKVE TTRKIISFHK EDKSLDPNNI SPQSILLDFI 660 SSSQTLRIWS FNTSIREHLN SDQLQKGKQI DEWWKQMTKA SGERMIDFTS LDERAMGMFW 720 VLSFTMAQPA CEAVMNWFTS VGVADLIQGP NLQPNERMTM MRETYPLSMS LLSGLSINLC 780 LKLAFQLEET IFLGQNVPSI AMVETYVRLL LITPHSLFRP HFTTLTQRSP SILSKSGVSL 840 LLLEILNYRL LPLYRYHGKS KALMYDVTKI ISMIKVKRGE HRLFRLAENL CMNLILSLRD 900 FFLVKKELKG PTEFTETLNR ITIISLAITM KTRGIAEVEH IIYLQPLLEQ IMATSQHTWS 960 EKTLRYFPPL IRDFLMGRMD KRGQAIQAWQ QAETTVINQC NQLLSPSAEP TYVMTYLSHS 1020 FPQHRQYLCA GAWMLMNGHL EINSANLARV LREFSPEEVT ANIYTMVDVL LHHIQLELQR 1080 GHQIQDLLSK AITNLAFFIW THELLPLDIL LLALIDRDDD PYALRLVINL LERPELQQRI 1140 KAFCTSRSPE HWLKNQPPKR VELQKALGNH LSGKERYPPF FDDIAARLLP VIPLIIYRLI 1200 ENDATDIADR VLAVYSTFLA FHPLRFTFVR DILAYFYGHL PSKLIVRILN VLGVSTKTPF 1260 SESFAQYLAS SNSSICPPPE YFANLLFGLV NNVIPPLSCK SKSNPSDAAG STARTTYNKP 1320 HTSSAGGISN SDGQRAFYQN QDPGSYTQLV LETAAIEILS LCVPASQIVS SLVQIIAHVQ 1380 AMLIQSNSGH GMSGGLGQNS GVPTSSGGGV EPVGANRPNT TASGINASNF VSRSGYSCQQ 1440 LSVLMIQACG LLLAQLPPEF HTLLYAEAAR IIKDCWWLAD SSRPVKELDS AVGYALLDPT 1500 WASQDNTSTA IGNIVALLHS FFSNLPHEWL ESTHTVIKHL RPVNSVAMLR IAFRILGPLL 1560 PRLAFARPLF MKTLALLFNV LGDVFGKNSQ ASPPVEASEI ADIIDFLHHA VMYEGQGGPV 1620 QSTSKPKLEI LTLCGKVMEI LRPDVQHLLS HLKTDPNSSV YAATHPKLLP PHSCTADYGR 1680 QYYIEVGFVN AEGSWLYTII GSTQADLIKH NKGERAVTQL LKDVDPLQTA VVLTLRRQRP 1740 RRELSPDYTC TRNSILEAWR ARRLAADVSD GLTPSRLRLA SAFPLLAASI NPRAAPEPLQ 1800 IKTRVSSSGS VHPSREIQIA SQIRDQRVMG RQPCCEKVGL KKGPWTADED QKLVTFLLSN 1860 GHCCWRLVPK LAGLLRCGKS CRLRWTNYLR PDLKRGLLSE EEEKLVIDLH EQLGNRWSKI 1920 AARLPGRTDN EIKNHWNTHI KKKLKKMGLD PVTHRPVMSL AQPDPLKQQQ QQQEPSVSGG 1980 TGADDKEEEE ETPTSAQPQG VACAASSASA VSSSCSSSAS ASAATPGADV DWPGLFEVDA 2040 ILDIDWAGLL SACGDDGGCS AIGVDMLFDQ CSDVGFDQDV WM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 1840 | 1944 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1735 | 1742 | RRQRPRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121868 | 0.0 | AK121868.1 Oryza sativa Japonica Group cDNA clone:J033103L16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625114.1 | 0.0 | mediator of RNA polymerase II transcription subunit 23 isoform X1 | ||||
Swissprot | F4I4P3 | 0.0 | MED23_ARATH; Mediator of RNA polymerase II transcription subunit 23 | ||||
TrEMBL | A0A0D9YXV1 | 0.0 | A0A0D9YXV1_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G32070.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7034 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 5e-79 | myb domain protein 20 |
Publications ? help Back to Top | |||
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