PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G30190.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 426aa    MW: 45054 Da    PI: 7.3018
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G30190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.31e-29155208358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaACgCHR+FHRre++
  OGLUM02G30190.1 155 TWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAACGCHRSFHRREPA 208
                      689**************************8887..99****************975 PP
2Homeobox17.85.6e-06318374153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft+eq e++ e+ +    + ++p+a++     +++g++ r+ kvW +N + 
  OGLUM02G30190.1 318 KRFRTKFTAEQKERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 374
                      789***********987655888779****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.3E-26156207IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-26157206IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-10157184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.485158206IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-30310377IPR009057Homeodomain-like
SuperFamilySSF466891.2E-19311375IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26317373IPR006455Homeodomain, ZF-HD class
CDDcd000860.00308318371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEYKRSSHVE EEEEEEEEED DEEEDEEEQG HHQYTTAAAQ QLHPQVLGSS ASSPSSLMDS  60
AAFSRPLLPP NLSLVSPSAA AAPGGSYLHA AHHHGQGRRV EAPGGESQHQ LQRHHQPARN  120
GVLGGVAGAH AASTLALVGG GGPRGGEGAA GEAPTWRYRE CLKNHAARMG AHVLDGCGEF  180
MSSPGDGAAA LACAACGCHR SFHRREPAVV APASLSLCPA SASASAAAGV VSQSPSATPT  240
GANSSRLMPL LLAPPHMQKR PPVLPVSPAS APAALAESSS EELRPPPPPP PLPSSHPHAH  300
AAAVVAASAS APPGPSKKRF RTKFTAEQKE RMREFAHRVG WRIHKPDAAA VDAFCAQVGV  360
SRRVLKVWMH NNKHLAKTPP SPTSQPPPPP LHHDPSPPPP PHHHHHHHHH HHPPQHHQQQ  420
QQQHDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-223163741674ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4804960.0AF480496.1 Oryza sativa clone BAC 49D11, complete sequence.
GenBankAP0053230.0AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05.
GenBankAP0058440.0AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626824.11e-162zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-163ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A0D9YX500.0A0A0D9YX50_9ORYZ; Uncharacterized protein
STRINGOGLUM02G30190.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-22homeobox protein 22