PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G25890.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 471aa    MW: 50544.5 Da    PI: 8.6257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G25890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19223273256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  OGLUM02G25890.1 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.73E-33222282No hitNo description
SuperFamilySSF541715.1E-23223281IPR016177DNA-binding domain
SMARTSM003805.9E-39223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-32223281IPR001471AP2/ERF domain
PROSITE profilePS5103222.998223280IPR001471AP2/ERF domain
PfamPF008472.8E-12224273IPR001471AP2/ERF domain
PRINTSPR003678.6E-11224235IPR001471AP2/ERF domain
PRINTSPR003678.6E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDAVDRGGGG GGARGHGRRW KGKGVSAAIS SSAAETQQPV PVLEDAPAAA ALLRPQKKIR  60
SPDRRLQRSI SSLSLAPASP DSSSVSNPMS PPAMSLPNQP PSSRHIFPFA YDPSPGAAAP  120
RLLPLLQYSS LYPQPLLPQQ QSPLQNQQMI SFGSSQQQQK QQPQFGAASP LFPPQFLPPE  180
EQQRLLLRYW SEALNLSPRG VRGGALPPSL YQHLLRAPGP PKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRTG GSGRTSASAA  300
ASCSSSSSSA PPTPDESHTQ QAQPQPQQPT EESSNTEPKP LLFVAEQDGI PEPELNPQLQ  360
TAEQHGSDGN TAMFQPSVTS GGVWGPADEA WFSAWGPGSS VWDYDMDSAH GLLLQSRLAG  420
EQTGMDYAYT APEVLVAPVP AAGTAMATAA SSSLPPRPPP PCHSPTFAWK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20222280463ATERF1
3gcc_A9e-20222280463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429860.0AK242986.1 Oryza sativa Japonica Group cDNA, clone: J090094O16, full insert sequence.
GenBankAP0047680.0AP004768.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0010C01.
GenBankAP0055130.0AP005513.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0014E22.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627619.10.0ethylene-responsive transcription factor ERF054
TrEMBLA0A0D9YVH10.0A0A0D9YVH1_9ORYZ; Uncharacterized protein
STRINGOGLUM02G25890.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-37ERF family protein