PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G23240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 1071aa MW: 121169 Da PI: 9.4197 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.8e-10 | 1008 | 1065 | 35 | 95 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++l+d+ r W v + k+ + +t+GWk F+ an+L++gD++ F + +e el ++ OGLUM02G23240.1 1008 VVILKDPMRRLWPVFY--HDKPVFVGFTAGWKPFAAANNLQAGDVCKFVKEM-DEDELAFQ 1065 689*************..9***9*************************9443.44444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.489 | 376 | 469 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-16 | 378 | 471 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-14 | 379 | 469 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.0E-4 | 379 | 469 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.66E-7 | 391 | 466 | No hit | No description |
SMART | SM01019 | 0.03 | 981 | 1070 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.75E-12 | 999 | 1070 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 1002 | 1070 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.42E-13 | 1006 | 1070 | No hit | No description |
Pfam | PF02362 | 1.9E-7 | 1007 | 1067 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.278 | 1009 | 1071 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1071 aa Download sequence Send to blast |
MDGAVRGQGC VGRLRSFNKT KKKNRNCSDD MRNGDDEEKK KYSHHDMKKN LRNDANEEKR 60 KSSDDMRDGD FEEKKCSRHD MKKNLRNDAN EERRKSSDDM RDGDDEEKKK CSRQDMKKNL 120 RNDADEEKRK SSDDMRDGDD EEKKKRSRHD MKKNSRNDAD EEKRKRKRKC SDDLKKSVLN 180 DASKEATSHS DWRKNRKAGS DAEQRGKKLL NGDKKAKSRK VTTPFFEKMR KIKMQRTSNQ 240 NGEKNMKSDG DSYKKTVPLS VNKGKMEKDG TNKRTLSNTL VAKERKMRPS DSMEMKMKKK 300 KRDASFVQPD ERTAQTFSTK NKEKKRKAPS TPLKREQKER VASSDNKKET KKACIVAIGN 360 EKKNCRDGKK KKRKAAFAFF KFVRDEFEEL LFIPPAVAPS LKDLIDRHVY LEDSEGKCSK 420 IRLSVVDGSL AFYEGWNSFV SEHCIKWGEF LLFEYTPEST FSVRVFGIDS CERLHFSVKS 480 GGKGAVKKRK ERHTLSDDLI SHYNGQYQDS EDIHDGPNVS GESPRSKEPK ITVDAEIGTR 540 NLVAKSINAA SETQDSERVE SGIGYGSLGA LGNKVRNLSN GECDTRSDSV FCIQEKTRRS 600 EVIIISDEAY STQVDEDTMK QTAPSEASEI HHVTINTQKD LERVVDGVCC ESSVALNNKM 660 GNLILGEPKN KNISPACSTE KTNGSEITPT TGAIPLTQEN IDTVKLNTIS CFEEDRSTTR 720 ESELAAAIPT TSETHDSDKD LGQKHQRNSV QVNSIIAVDK YPNDSEMNIS GNIFRIYEAP 780 AGTRCLEKWK RGIVNGRAAL DDIGQVRPEK TQKAGEKLVG NCGAMGESPV DLRIESDVTD 840 TCLKPILNIP IEELSILDSV SISKCGRSRT EVNHLFNQKG ATVQLQTKKE PLKPTGSSGN 900 RKGDKIAVSV NRVFAHQSEL QIPQQENGNF TSCVTPVALL PAKAELLDLD DHSLQFCIPS 960 TIQKWLVFSY SVVQWMQFVE FMLIAVRAEL PKSLPITCRQ KGRYDRNVVI LKDPMRRLWP 1020 VFYHDKPVFV GFTAGWKPFA AANNLQAGDV CKFVKEMDED ELAFQVYITR K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 165 | KKRSRHDMKKNSRNDADEEKRKR |
2 | 162 | 168 | KRKRKRK |
3 | 163 | 168 | RKRKRK |
4 | 368 | 373 | KKKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121990 | 0.0 | AK121990.1 Oryza sativa Japonica Group cDNA clone:J033109I02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624189.1 | 0.0 | B3 domain-containing protein Os02g0598200 | ||||
Refseq | XP_015624190.1 | 0.0 | B3 domain-containing protein Os02g0598200 | ||||
Swissprot | Q6K5K2 | 0.0 | Y2982_ORYSJ; B3 domain-containing protein Os02g0598200 | ||||
TrEMBL | A0A0D9YUH8 | 0.0 | A0A0D9YUH8_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G23240.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12272 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 2e-11 | B3 family protein |
Publications ? help Back to Top | |||
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