PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G22030.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 40355.5 Da PI: 7.2026 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172 | 1.9e-53 | 38 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ OGLUM02G22030.2 38 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 131 79*********************9999666689***************988899**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grap+g kt Wvmheyr+ OGLUM02G22030.2 132 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 164 .99*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-65 | 26 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 38 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-29 | 39 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MRLARQQQQQ VVVAATMEHD VHHHRQMMQQ QQQQEMDLPP GFRFHPTDEE LITHYLLRKA 60 ADPAGFAARA VGEADLNKCE PWDLPSRATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW 120 KATGKDREIF RGKALVGMKK TLVFYTGRAP RGGKTGWVMH EYRIHGKHAA ANSKQDQEWV 180 LCRVFKKSLE LAAAAAAAGR RGAGAGTDVG PSSMPMADDV VGLAPCALPP LMDVSGGGGG 240 AGTASLSATA GAAAAPPPAH VTCFSNALEG QFLDTPYLLP AADPADHLAM SSASPFLEAL 300 QMQYVQDAAA AGGAGMVHEL LMGGGWYCNK GERERLSGAS QDTGLTSSEV NPGEISSSSR 360 QQRMDHHDAS LWAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 24 | 187 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 24 | 187 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 24 | 187 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 24 | 187 | 3 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-55 | 24 | 187 | 3 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 24 | 187 | 3 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028180 | 0.0 | AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds. | |||
GenBank | CT834765 | 0.0 | CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623389.1 | 0.0 | NAC domain-containing protein 92 isoform X1 | ||||
Swissprot | Q9FLJ2 | 9e-89 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0D9YU29 | 0.0 | A0A0D9YU29_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G22030.1 | 0.0 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 4e-85 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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