PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G19090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 460aa MW: 50951.1 Da PI: 4.6662 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.2 | 7e-35 | 68 | 160 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++ ++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +++k+ll+ OGLUM02G19090.1 68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLLK 152 9****************************************************************999.........***************** PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 ki r++s+ OGLUM02G19090.1 153 KIVRRRSS 160 ****9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.2E-55 | 64 | 157 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.5E-33 | 64 | 157 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.0E-38 | 64 | 157 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.9E-16 | 68 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-31 | 68 | 157 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-16 | 106 | 118 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 107 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-16 | 119 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MDHNTDPPPT TMVDAAAALL LEPKLEGYDD GGGGEPLQPA PFVSPLDQLM QPPRPLEALL 60 QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV 120 RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE 180 LNTLRREKNA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL 240 RQLKVHRQQK EIDSTRVKRK FLKHVPHGNI ESDGDLNLAM LPENIGLDGI EAPDDIGALV 300 QGFDTQEELE LGSGVELLEI PPASGPRGQD PTIGRSKGKN VLSPGLDATS SEADCLGSFS 360 DNMGMLSDSM LQTAGKLMDA DDDERIWGVD ASSALQSSCS GTSQQAYGSL VSDPYLMEMA 420 NKPEKFWELD FQALDDGDLQ LDKCVIDDPA LQQQRGNMNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-24 | 60 | 160 | 11 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101934 | 0.0 | AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623061.1 | 0.0 | heat stress transcription factor A-3 | ||||
Swissprot | Q6H6Q7 | 0.0 | HSFA3_ORYSJ; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A0D9YT21 | 0.0 | A0A0D9YT21_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA02G0162000.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART02G18800.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 2e-70 | heat shock transcription factor A3 |
Publications ? help Back to Top | |||
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