PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G06210.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 194aa    MW: 20470.7 Da    PI: 5.5997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G06210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002284106123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C++C + F ++  L  H++ H
  OGLUM02G06210.1  84 FACHYCRREFYSSQALGGHQNAH 106
                      78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.71E-682111No hitNo description
PROSITE profilePS5015711.11584111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEGMSKLAGG GGDVTFVGGG RRMAAAAAAA LRLVELDLIG TVGAAVPGQA TAPRLLVVSP  60
APAKEEDEEE ERDGDDDGEP RQLFACHYCR REFYSSQALG GHQNAHKRER TLARRGAGGE  120
QASSSSFAIH HGAFVSASPG WMARVLHGEA PPAISVAGDG GGGERWWWGG GNVGYYWPRD  180
GDDQTRQLDL TLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040870.0AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8354070.0CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624955.11e-107zinc finger protein 1
TrEMBLA0A0D9YNB61e-137A0A0D9YNB6_9ORYZ; Uncharacterized protein
STRINGOGLUM02G06210.11e-138(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-17zinc-finger protein 1