PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G01050.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 419aa    MW: 47883.1 Da    PI: 8.5556
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G01050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.2e-06110132123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cg sF  + +Lk+H+++H
  OGLUM02G01050.1 110 HTCQECGASFQKPAHLKQHMQSH 132
                      79*******************99 PP
2zf-C2H221.85e-07138162123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  dC+ s+ rk++L+rH+ +H
  OGLUM02G01050.1 138 FICPleDCPFSYIRKDHLNRHMLKH 162
                      78*********************99 PP
3zf-C2H215.45.4e-05167192123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   Cg+ Fs k n++rH +  H
  OGLUM02G01050.1 167 FTCSmdGCGRKFSIKANMQRHVKEiH 192
                      89********************9988 PP
4zf-C2H215.64.6e-05204228123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+k+F+  s +k+H  +H
  OGLUM02G01050.1 204 FVCKeeGCNKVFKYASKMKKHEESH 228
                      89*******************9988 PP
5zf-C2H217.71e-05295319223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      kC+   C  sFs+ksnL++Hi+  H
  OGLUM02G01050.1 295 KCSfeGCECSFSNKSNLTKHIKAsH 319
                      688899***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355246486IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5107129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.547110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576674.3E-11123164No hitNo description
Gene3DG3DSA:3.30.160.605.9E-12130164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808138167IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4138162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-8148196No hitNo description
Gene3DG3DSA:3.30.160.601.2E-7165194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.341167197IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4167192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-7201228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.764204228IPR007087Zinc finger, C2H2
SMARTSM003550.0038204228IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206228IPR007087Zinc finger, C2H2
SMARTSM003555.7236261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
SMARTSM0035515264285IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5276316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-7277332No hitNo description
PROSITE profilePS5015711.365294324IPR007087Zinc finger, C2H2
SMARTSM003550.002294319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280296319IPR007087Zinc finger, C2H2
SMARTSM003555.8325351IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280327351IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MKARRNQEPQ SSLPAAAAAA PSSSRRSAGN HTSSQPRSPP MCSGDDIDGD TRVEATQHRD  60
IRRYKCEFCT VVRSKKCLIR AHMVAHHKEE LDKSEIYKSN GEKVVHEGDH TCQECGASFQ  120
KPAHLKQHMQ SHSDERSFIC PLEDCPFSYI RKDHLNRHML KHQGKLFTCS MDGCGRKFSI  180
KANMQRHVKE IHEDENATKS NRQFVCKEEG CNKVFKYASK MKKHEESHVK LDYVEVVCCE  240
PGCMKTFTNV ECLRAHNQAC HQYVQCDICG EKHLKKNIKR HLRAHEEVPS TERIKCSFEG  300
CECSFSNKSN LTKHIKASHD QVKPFACRFT GCEKVFPYKH VRDNHEKSSA HVYTQANFTE  360
MDEQLLSCPR GGRKRKAVTV ETLTRKRVTM HGDASSLDNG TEYLRWLLSG GDDDSSQTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A4e-1811430019174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D4e-1811430019174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626855.10.0transcription factor IIIA isoform X1
SwissprotQ84MZ41e-121TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0D9YLB50.0A0A0D9YLB5_9ORYZ; Uncharacterized protein
STRINGOGLUM02G01050.20.0(Oryza glumipatula)
STRINGORGLA02G0010700.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-123transcription factor IIIA