PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G45580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 724aa MW: 75697.1 Da PI: 6.8768 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 534 | 630 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ ++ OGLUM01G45580.1 534 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGVSIPMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVIY--SDiKS 624 79*************************999***********7777*******99777777777777.********************..66688 PP E..EEE CS B3 90 felvvk 95 ++++++ OGLUM01G45580.1 625 GKYLIR 630 877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-27 | 524 | 639 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.27E-31 | 531 | 632 | No hit | No description |
SuperFamily | SSF101936 | 9.55E-22 | 532 | 626 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.278 | 533 | 635 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-16 | 533 | 635 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-15 | 534 | 629 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MDASAGSSAP HSHGNPGKQG GGGGRGKAPA AEIRGEAARD DVFFADDTFP LLPDFPCLSS 60 PSSSTFSSSS SSNSSSAFTT AAGGGCGGEP SEPASAADGF GELADIDQLL DLASLSVPWE 120 AEQPLFPDDV GMMIEDAMSG QPHQADDCTG DGDTKAVMEA AGGGDDAGDA CMEGSDAPDD 180 LPAFFMEWLT SNREYISADD LRSIRLRRST IEAAAARLGG GRQGTMQLLK LILTWVQNHH 240 LQKKRPRTAI DDGAASSDPQ LPSPGANPGY EFPSGGQEMG SAAATSWMPY QAFTPPAAYG 300 GDAMYPGAAG PFPFQQSCSK SSVVVSSQPF SPPTAAAAGD MHASGGGNMA WPQQFAPFPV 360 SSTSSYTMPS VVPPPFTAGF PGQYSGGHAM CSPRLAGVEP SSTKEARKKR MARQRRLSCL 420 QQQRSQQLNL SQIHISGHPQ EPSPRAAHSA PVTPSSAGCR SWGIWPPAAQ IIQNPLSNMS 480 NPPPSTSKQP KPSPEKPKPK PQAAATAGAE SLQRSTASEK RQAKTDKNLR FLLQKVLKQS 540 DVGSLGRIVL PKKEAEVHLP ELKTRDGVSI PMEDIGTSQV WNMRYRFWPN NKSRMYLLEN 600 TGDFVRSNEL QEGDFIVIYS DIKSGKYLIR GVKVRRAAQE QGNSSGAVGK HKHGSPEKPG 660 VSSNTKAAGG EDGTGGDDSA EAAAAAAAGK ADGGGCKGKS PHGVRRSRQE AAAAASMSQM 720 AVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-38 | 529 | 641 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-38 | 529 | 641 | 1 | 110 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105441 | 0.0 | AK105441.1 Oryza sativa Japonica Group cDNA clone:001-125-A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629311.1 | 0.0 | B3 domain-containing protein VP1 isoform X2 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A0A0D9YJ09 | 0.0 | A0A0D9YJ09_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G45580.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 2e-60 | B3 family protein |