PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G44170.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 412aa    MW: 42745.1 Da    PI: 5.7098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G44170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05108130123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F ++   + H+r+H
  OGLUM01G44170.1 108 FPCHVCSKEFGSRKAVHGHMRVH 130
                      89*******************99 PP
2zf-C2H216.81.9e-05301323123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk Fs+   L  H+r+H
  OGLUM01G44170.1 301 HPCKTCGKEFSTGVALGGHMRKH 323
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0012107131IPR007087Zinc finger, C2H2
SMARTSM003550.0089108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676108135IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-9108130No hitNo description
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM003555248272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250272IPR007087Zinc finger, C2H2
SuperFamilySSF576676.24E-9296323No hitNo description
PfamPF139123.9E-10301325IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-4301323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.019301323IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219301328IPR007087Zinc finger, C2H2
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEEGEIHPGG GGGGGYYDSG SETEDDDDRY VFQSRRDDEE EEEEEEGVNP ASKRRRLEDI  60
LAETRGALPL PSPTPSSSGS EGTISDDHGD GIAGAAAAAD APVARVAFPC HVCSKEFGSR  120
KAVHGHMRVH QADKDKEKEP SLHLALGWTS TGKRGANGNA RAVTVAFAPM EQAVGDDDGD  180
ARAIVLAPAA QPQPQPMVVA EAANPPNQVA DDNHRLPVPA AAPYVGAAAA PARRRARPKR  240
NAGQGGPYRC SYPGCKGEYR THQGLGGHVA GHINREKQAA AAAQGGSGGG LGGGARPEGN  300
HPCKTCGKEF STGVALGGHM RKHYDPKKKK KHAGLVLTLS VAPPTPAPAP SIAGAALPPA  360
EVKADVDEHE AEQVPMAPVS PPAEVRGNIV RIFGVDIEKP ADEEEQEGGS DV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881238.10.0zinc finger protein ZAT1-like
TrEMBLA0A0D9YIF40.0A0A0D9YIF4_9ORYZ; Uncharacterized protein
STRINGOGLUM01G44170.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139281224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.13e-09C2H2 family protein