PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G39390.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 280aa    MW: 29456.9 Da    PI: 5.8886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G39390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.42.2e-21113174258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 
                       Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+  +dp  +++i Y geH++
  OGLUM01G39390.1 113 ADGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 174
                      6***************************9999********87621455257899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-22105175IPR003657WRKY domain
PROSITE profilePS5081116.788107172IPR003657WRKY domain
SuperFamilySSF1182903.27E-20108175IPR003657WRKY domain
SMARTSM007743.5E-29112176IPR003657WRKY domain
PfamPF031061.5E-22114174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAMLGSSSAV VLELMTMGYQ SAAYLGELLR AASPAQAGDE QQELAAEILR CCDRVIAKLS  60
RGGATGATTG KKRKAAESAA AAAMTSSSLP VTPTKRRARG AEAVREVRSG TTADGFIWRK  120
YGQKEINGCK HPRLYYRCAF RGQGCLATRR VQQSQSQDDP AAAFVIAYYG EHTCGGNAAA  180
AAACRDGELM PPAVINSGAS SFAAAWNMAS REPASSLAVE RRSCDGDAPS ETSQGWSPSF  240
SSEVELDVVG FDLAGADSSA SPVWEFLNGS FDWESVINSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141141741068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086570.0AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence.
GenBankAY8706060.0AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621234.10.0probable WRKY transcription factor 30
TrEMBLA0A0D9YGM30.0A0A0D9YGM3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G39390.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-15WRKY DNA-binding protein 46