PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G39380.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 356aa    MW: 37629.5 Da    PI: 5.7997
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G39380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.2e-22137198258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS..TTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaed..pkvveitYegeHnh 58 
                      dDgy+WrKYGqK++++++fprsYYrC+++   +Cp++k+v++ + d  p + +++Y+ eH++
  OGLUM01G39380.1 137 DDGYQWRKYGQKKINNTNFPRSYYRCSYHrerRCPAQKHVQQRDGDdvPALHVVVYTHEHTC 198
                      8***************************99999*******99887645678899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24122198IPR003657WRKY domain
SuperFamilySSF1182902.48E-21131198IPR003657WRKY domain
SMARTSM007742.7E-31136200IPR003657WRKY domain
PROSITE profilePS5081118.326137199IPR003657WRKY domain
PfamPF031063.8E-23137198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQAQSRLAAA ASGGGGSGIS GSGGISRLSG GAGEEHEAVV RELTRGHELT ARLRAEALRA  60
LRGQGQAEAT ATFILGEVSH AFTVCLSIMA SASPSASPPQ PDETPPADSA VSPPPPPRAA  120
REDNVPRKRL LTASPYDDGY QWRKYGQKKI NNTNFPRSYY RCSYHRERRC PAQKHVQQRD  180
GDDVPALHVV VYTHEHTCLQ GAPAELPDAA TNGGAAAAAS PDYFPAGGET PSSLRRLRGV  240
GGGGLQPQFV DHRAAMEERE RQVLVSSLAR VLQGRQCYDD DDTDVASLGA VHARAPAAAA  300
PVAASSSSSG PVDAAGEELD VMDYDMTDTL FWGPFGTDSN SYDGNLTSTR CFDLIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-15137198968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877887.10.0probable WRKY transcription factor 4
TrEMBLA0A0D9YGM20.0A0A0D9YGM2_9ORYZ; Uncharacterized protein
STRINGOGLUM01G39380.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-18WRKY family protein