PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G35080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 34257.6 Da PI: 4.5569 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.5e-30 | 98 | 156 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+ OGLUM01G35080.2 98 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 156 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.1E-31 | 95 | 158 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-26 | 96 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-36 | 97 | 157 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.869 | 98 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 99 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MAAGEEVMDR STSAEDGYCS AGTDSPRAES VDEQGAAEES SPRGGQKREL PSPSASPSSP 60 LPPAAKRSRR SVEKRVVSVP IAECGDRPKG AGEGPPPSDS WAWRKYGQKP IKGSPYPRGY 120 YRCSSSKGCP ARKQVERSRA DPTVLLVTYS FEHNHPWPQP KSSSCHASKS SPRSTAPKPE 180 PAADGQQPEP AENESSASAE LEVPEPEPEQ ESEPVVKQEE EQKEEQKAVV EPAAVTTTVA 240 PAPAVEEEDE NFDFGWIDQY HPTWHRSYAP LLPPEEWERE LQGDDALFAG LGELPECAVV 300 FGRRRELGLA ATAPCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-20 | 74 | 158 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 6e-20 | 74 | 158 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841583 | 0.0 | CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647591.1 | 0.0 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D3EU11 | 0.0 | A0A0D3EU11_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YEZ9 | 0.0 | A0A0D9YEZ9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FT57 | 0.0 | A0A0E0FT57_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2WV31 | 0.0 | A2WV31_ORYSI; Defense-responsive protein WRKY13 | ||||
TrEMBL | I1NRP7 | 0.0 | I1NRP7_ORYGL; Uncharacterized protein | ||||
STRING | ONIVA01G35310.1 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA01G0253700.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART01G30930.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-38 | WRKY DNA-binding protein 65 |