PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G35080.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 405aa    MW: 44274.4 Da    PI: 5.1472
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G35080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30187245259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+
  OGLUM01G35080.1 187 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFEHNHP 245
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30184247IPR003657WRKY domain
SuperFamilySSF1182907.19E-26185247IPR003657WRKY domain
SMARTSM007742.9E-36186246IPR003657WRKY domain
PROSITE profilePS5081131.869187247IPR003657WRKY domain
PfamPF031064.7E-26188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRTYTFMCRA PPHTDPLLFF PPFSSLLFFS SSVRDTALSL WVGGVIITKA TKGARRDIIY  60
SLGKRWISFS RFGLFIRSWS VCAPGVVVVM AAGEEVMDRS TSAEDGYCSA GTDSPRAESV  120
DEQGAAEESS PRGGQKRELP SPSASPSSPL PPAAKRSRRS VEKRVVSVPI AECGDRPKGA  180
GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD PTVLLVTYSF  240
EHNHPWPQPK SSSCHASKSS PRSTAPKPEP AADGQQPEPA ENESSASAEL EVPEPEPEQE  300
SEPVVKQEEE QKEEQKAVVE PAAVTTTVAP APAVEEEDEN FDFGWIDQYH PTWHRSYAPL  360
LPPEEWEREL QGDDALFAGL GELPECAVVF GRRRELGLAA TAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19163247679Disease resistance protein RRS1
5w3x_D2e-19163247679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415830.0CT841583.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C103H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647591.10.0probable WRKY transcription factor 65
TrEMBLA0A0D9YEZ80.0A0A0D9YEZ8_9ORYZ; Uncharacterized protein
STRINGOGLUM01G35080.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-37WRKY DNA-binding protein 65