PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G29520.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 532aa    MW: 55038.7 Da    PI: 8.5495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G29520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33322379259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  OGLUM01G29520.1 322 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 379
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-35306381IPR003657WRKY domain
SuperFamilySSF1182901.83E-29313381IPR003657WRKY domain
PROSITE profilePS5081132.535316381IPR003657WRKY domain
SMARTSM007742.6E-39321380IPR003657WRKY domain
PfamPF031063.1E-26322379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MGGEPRARAE AAWAAALPAA LVALLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP  60
PASAAVSSRS DGTGQMAAGV TLACAAPPPL RAPRASEGGR RRGVVKGGAG TDTCRSAATA  120
RERGCVRARA KNHEHGQRRR EAAVDPAMSG EYQFQDELAP LFARPGGGAG EMQMLPSSWF  180
ADYLQAGTPM QMDYDLMCRA LELPVGEDVK REVGVVDVVA AGGGGAPPLT PNTTSSMSTS  240
SSEGVGGGGG GGAGAGAGEE ESPARCKKEE DENKEEGKGE EDEGHKNKKG SAAKGGKAGK  300
GEKRARQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER  360
SYQDPAVVIT TYEGKHTHPI PATLRGSTHL LAAHAQAAAA AAAAHQLHHH HGHHGHHGMA  420
PPLPLGSGAA EQFGRSSGID VLSSFLPRAA AAHHGMTTMG GAAATTTTSH GLNSAISGGG  480
GVSSATTSAV TVAASAQPSS PAALQMQHFM AQDLGLLQDM LLPSFIHGTN QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27312382878Probable WRKY transcription factor 4
2lex_A2e-27312382878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418440.0AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBankAY3418550.0AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBankAY8706040.0AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025875631.10.0WRKY transcription factor WRKY24-like isoform X2
TrEMBLA0A0D9YCU90.0A0A0D9YCU9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G29520.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.15e-48WRKY DNA-binding protein 71