PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G28930.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 326aa    MW: 33914.8 Da    PI: 7.153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G28930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.4e-26152213159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  OGLUM01G28930.1 152 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGDHTCA 213
                      59***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-28139213IPR003657WRKY domain
SuperFamilySSF1182907.59E-25145213IPR003657WRKY domain
PROSITE profilePS5081121.643147210IPR003657WRKY domain
SMARTSM007741.2E-38152214IPR003657WRKY domain
PfamPF031063.0E-25153212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGSSSDGSR YGGAGRCALV AELVKMQGMV RQLEAEMGTH GGGGGGGGGA APMAAGADER  60
CRALVSGLLS SIDRSISIAR SCCTEAAAAG RLTQPAGAAP ESPPSADGSA GSDLGADSRC  120
RANAAGPCKK RKTLPKWSKQ VKVRSVQDVG PLDDGFSWRK YGQKDILGAK YPRAYFRCTH  180
RHTQGCHASK QVQRADGDPL LFDVVYHGDH TCAHGVRSAA AAIDGQAAAS AEQKHQPTPP  240
QEQNAVSVAF TSMAVVNAST SSPFVSPATS DCQISYELGG GSMAGVRNVP DVELASKTNS  300
SMGDDMEFMF SLDADFLDTY KYSSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-21149212568OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769260.0AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632319.10.0probable WRKY transcription factor 53
TrEMBLA0A0D9YCL90.0A0A0D9YCL9_9ORYZ; Uncharacterized protein
STRINGOGLUM01G28930.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-38WRKY family protein