PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G27100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 350aa MW: 36829.5 Da PI: 6.4065 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85 | 6.9e-27 | 179 | 237 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p ++++tY eH h+ OGLUM01G27100.1 179 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGMLVVTYMAEHCHP 237 799***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 30.377 | 173 | 239 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 174 | 239 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.24E-24 | 176 | 239 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-32 | 178 | 238 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-22 | 180 | 237 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MRGPLLLRAV VVVAMEHFND WDLQAVVRSC SFPQSEPPRV GVGVPAAPGA GGAPVVVAPP 60 ARAPDGPDQM ARASASASAL YDLEYLDLDH KPFLLPGSSS SSSSSRAVAR ARGEDDGKGR 120 HEVMISFPAA AAASTSGAQP RSPSGRKPGI RTPRPKRSKK SQLKKVVYEV PVADGGVSSD 180 LWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKMVERSP AKPGMLVVTY MAEHCHPVPT 240 QLNALAGTTR HKSAPTGDDD KPTSPGPAAG RAAAGEGVVK CEDVDGNELS AMAADGGAED 300 TAAAADDDGE LWPEGMGLEL DEFLGPMDDD VFEFDHVLED NGVLGRRLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-21 | 160 | 240 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-21 | 160 | 240 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111416 | 0.0 | AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence. | |||
GenBank | AY870601 | 0.0 | AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640600.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | A0A0D9YBX6 | 0.0 | A0A0D9YBX6_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G27100.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 9e-40 | WRKY family protein |