PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23750.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 697aa MW: 74420.6 Da PI: 5.4056

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23750.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	459	481	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C ++ar G C Gd C++ H OGLUM01G23750.1 459 KSKPCTHYAR-GSCLKGDDCPYDH 481 6789****.*********** PP
2	zf-CCCH	31.1	4e-10	487	508	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f+++G C +Gd+CkF+H+ OGLUM01G23750.1 487 PCHNFMENGMCIRGDKCKFSHV 508 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.967	428	455	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-5	429	453	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.079	429	454	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.3E-4	456	482	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.187	457	484	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-5	457	483	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	459	482	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0018	485	509	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-6	486	509	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	487	510	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-7	487	508	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	487	507	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MEEPSPVPPA AAPATLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAACP 60 DAEVETAAAA IPPGVSGGLP HVVSPPPADV GGDRGKNLEV EVALGNPTPH ETPSTSASPD 120 AAANPTTDPG VVPQGTEEGR VAGVERVEGV EEVVFAGGTS GEADADGDEL GAGAGLMGDD 180 EALRSMQACL DGEDSELVIE MVGNDDEQLQ LDAMMNNLSG LIDDASACVM SAQSCGVSGD 240 KLQSDDRVAE EVKELGAGIG NDRSVCSLDH GSLDGGGGFE EGEIEGDTQN LDADDSGNSE 300 LQDDVELEED FDSRRIEEDG SCGHDVKSNL HLIPQKGNGD IARNMLCNSK GDSQMHVARA 360 QAVSYDEVLD WNETPLPDDK ALKHGNTRKR TLTEERKAKK TKTKRIKRAL QREAEGVKRL 420 KLQPVIKPKV VKVCHFYLHG KCQQGNLCKF SHDTTPLTKS KPCTHYARGS CLKGDDCPYD 480 HELSKYPCHN FMENGMCIRG DKCKFSHVIP TAEGPSTPDA KKSNASSVPE KANCQEQTSR 540 QKTSTVYSVE PATSAPIKHH SILKNLAGIS GNAQKVPVRI PRGIQFLPFN KDRPDSSILH 600 QDVVSTEKHK NPTGGPHQNF GRPQPADGEK LGKHNGHRSA PLLDEKDSSK QADLHPCSEP 660 KKNSLPTTAA VPSSVSTQHE VSEASRILQE FLFGSGN

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MEEPSPVPPA AAPATLAAAP PTTDVLSRRR AHLDSASYRA LSRLFSHCLH LHPPRHAACP  60
DAEVETAAAA IPPGVSGGLP HVVSPPPADV GGDRGKNLEV EVALGNPTPH ETPSTSASPD  120
AAANPTTDPG VVPQGTEEGR VAGVERVEGV EEVVFAGGTS GEADADGDEL GAGAGLMGDD  180
EALRSMQACL DGEDSELVIE MVGNDDEQLQ LDAMMNNLSG LIDDASACVM SAQSCGVSGD  240
KLQSDDRVAE EVKELGAGIG NDRSVCSLDH GSLDGGGGFE EGEIEGDTQN LDADDSGNSE  300
LQDDVELEED FDSRRIEEDG SCGHDVKSNL HLIPQKGNGD IARNMLCNSK GDSQMHVARA  360
QAVSYDEVLD WNETPLPDDK ALKHGNTRKR TLTEERKAKK TKTKRIKRAL QREAEGVKRL  420
KLQPVIKPKV VKVCHFYLHG KCQQGNLCKF SHDTTPLTKS KPCTHYARGS CLKGDDCPYD  480
HELSKYPCHN FMENGMCIRG DKCKFSHVIP TAEGPSTPDA KKSNASSVPE KANCQEQTSR  540
QKTSTVYSVE PATSAPIKHH SILKNLAGIS GNAQKVPVRI PRGIQFLPFN KDRPDSSILH  600
QDVVSTEKHK NPTGGPHQNF GRPQPADGEK LGKHNGHRSA PLLDEKDSSK QADLHPCSEP  660
KKNSLPTTAA VPSSVSTQHE VSEASRILQE FLFGSGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003308	0.0	AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622402.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_015622403.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	0.0	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A0D9YAR3	0.0	A0A0D9YAR3_9ORYZ; Uncharacterized protein
STRING	OGLUM01G23750.2	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-06	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]