PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G20910.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 419aa    MW: 47803.5 Da    PI: 5.2164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G20910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.28.6e-291242613127
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                      pG+rF P+d el+ ++L++k++g++l+  + ++ +d+y+ +P++L +k+   +e +wy Fs+r++ky++gkr++r+t   g+Wk+t k+++vl+
  OGLUM01G20910.1 124 PGIRFVPSDIELILDFLRPKLRGEQLPSYSYMHVCDVYSDHPKELTSKLGPsREGNWYMFSPRNRKYNKGKRPSRSTGqLGFWKSTTKNEAVLD 217
                      9***************************999**************9655541556********************66538*************9 PP

              NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                      +  ++ l+g k  L+++         k +++++ kt W m e+ 
  OGLUM01G20910.1 218 AlsDNMLIGYKACLTYHeydesmptpKLKKENAIKTPWKMWEFV 261
                      9888889**********8887777766899999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.251122289IPR003441NAC domain
SuperFamilySSF1019412.48E-37122289IPR003441NAC domain
PfamPF023651.6E-14124261IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAESSESAWP QQSQQLQISS TMPAGSAWPE EENLENLEQP LLLLMPSSED HREQQLVPVP  60
WLQQDQDQEW HEQEQFLLLP WLHQDQEWHE QEQFLPLKNQ NQEQLQDQQP LQDQEETRRY  120
LGVPGIRFVP SDIELILDFL RPKLRGEQLP SYSYMHVCDV YSDHPKELTS KLGPSREGNW  180
YMFSPRNRKY NKGKRPSRST GQLGFWKSTT KNEAVLDALS DNMLIGYKAC LTYHEYDESM  240
PTPKLKKENA IKTPWKMWEF VCSNSNRPFD AEEEPMRLND WVLCKVTNKD NKVTTKKFKP  300
QRSKKPKKPK KLQQEEQPQN QGIVIRQPSE SGSASSSHQE IPGSSLPGAG GDAAAAAATA  360
AAVVDPMPLH MIPPSSWNYF STGVTADGIV MDDSTGVDSY GCVDGAGALN FARNIFYHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1712429117170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0032600.0AP003260.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0468B07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.10.0protein ATAF2
TrEMBLA0A0D9Y9P00.0A0A0D9Y9P0_9ORYZ; Uncharacterized protein
STRINGOGLUM01G20910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-20NAC domain containing protein 47