PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G15940.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 567aa    MW: 60425.6 Da    PI: 5.6605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G15940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.93.3e-22361851127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk..............kvkaeek.ewyfFskrd..kkyatgkrkn 75 
                      +p+G+ F P+d el    L+ k+ +++    l++v+++++i++++P   p                + +ee+  +yfFs+r+  +k+++++r++
  OGLUM01G15940.1  36 MPVGCYFVPKDLELFAI-LRCKLVRSQlpGALNNVFEHIRILEFHPPASPPplylslspfinhqtYIGNEEDgYIYFFSRRQfvTKARNKRRPT 128
                      699************66.666655555233445679999******99887346788999998765333344435699999983345668999** PP

              NAM  76 ratksgyWkatgkdkevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      r++k g+Wka+g +k++ sk  +g +vg k t+vfy    + ++++ kt+W mhe++
  OGLUM01G15940.1 129 RVAKGGTWKASGGSKTLRSKkvGGIDVGQKLTMVFYerrFEGDQNPIKTNWSMHEFT 185
                      *****************998888899**********43313456678********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-2530192IPR003441NAC domain
PROSITE profilePS5100525.86236209IPR003441NAC domain
PfamPF023651.3E-1337185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAEQPLGGGG GDGNNNGKWK GKEKVVPEYG KNRHGMPVGC YFVPKDLELF AILRCKLVRS  60
QLPGALNNVF EHIRILEFHP PASPPPLYLS LSPFINHQTY IGNEEDGYIY FFSRRQFVTK  120
ARNKRRPTRV AKGGTWKASG GSKTLRSKKV GGIDVGQKLT MVFYERRFEG DQNPIKTNWS  180
MHEFTKIIDG SKNQEGGRRT GERCRRGVEH GRALHVVGTA TSYATAAIAG HGRTIISNAA  240
TATAIAGHGR TIVINAATAT AIAGLGRIVV GDVATTATAI AGPGRIVVCD VAACQQMPGM  300
AGSSSAMPLP LSLPGLAGGM MSMADQANMA STSQASTPSS ELLQDWYDEF EITYGAVAPP  360
SPSTISWEAP QSSPTGWWPS PNGEPVQHDG YLGMAANPTS YMLEHPLPTA AIPPEPMTPP  420
TSSPAPPPAV DNHHRLSPPH DAAGSNYNHP ELAGYNGGVQ AQHEHQHQPQ ELQPALLVDG  480
EDGYGAIADG DGDTQLGVAE LDTERIAEMV NHIMDGEFEF KFEDNTVLKY NEVFPDDDKV  540
VAAPMMIDGG GDGDGADGGD GGDPFDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661070.0AK066107.1 Oryza sativa Japonica Group cDNA clone:J013052A02, full insert sequence.
GenBankAP0033310.0AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0D9Y7W20.0A0A0D9Y7W2_9ORYZ; Uncharacterized protein
STRINGOGLUM01G15940.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.16e-09NAC family protein