PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G10550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 23615.7 Da PI: 10.7326 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 64.6 | 3.7e-20 | 1 | 76 | 24 | 89 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...........k 89 ++a+c a +F+L++ LG+++d++t++WLlqqa+ ai + tgt++++ + + +++ + +++++ + OGLUM01G10550.1 1 MPALCVAWIFQLTRDLGHKSDGETVQWLLQQAELAIVATTGTGTIPVGGA-DRQQEDALPAEQIDavagepspcgrR 76 9*****************************************77777333.11111111112222333333334441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.4E-14 | 1 | 55 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 16.587 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPALCVAWIF QLTRDLGHKS DGETVQWLLQ QAELAIVATT GTGTIPVGGA DRQQEDALPA 60 EQIDAVAGEP SPCGRRGRRS SPLRRVPASS GGPHTSHASG PSPGRALFGE REGGGERRVV 120 EERKNRNATY ILKMAQPSGI IVFLRSSPSP RRMQPAARHT FCSLFLQFSG NCGWVANPIS 180 NSAFPRAHRH THPATAAAAT TTTTRPPWTK EMRRESCCG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007789 | 1e-123 | AC007789.1 Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence. | |||
GenBank | AP003074 | 1e-123 | AP003074.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10. | |||
GenBank | AP014957 | 1e-123 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9Y604 | 1e-159 | A0A0D9Y604_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G10550.1 | 1e-159 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2864 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 1e-20 | TCP family protein |